Basic Information
Gene Model:Bol039893
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000015
Sequence:
 | 
Gene Structure
Nucleotide Length:615 bp
Transcript Length:615 bp
Protein Length:204 aa
Strand:-
Location:C06: 32259504 : 32260118
Gene CDSs(1): 1-615 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.730.10no description 40 101 2.5e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 40 101 6.6e-23IPR016177DNA-binding, integrase-type
Segsegseg 124 139 NANot foundNot found
HMMPfamPF00847AP2 40 91 5e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 41 98 22.115IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 41 104 3.5e-34IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LQZ21e-93DRE2D_ARATH Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1
TrEMBL
Best HitE_value Description
A0JQ723e-87A0JQ72_ARATH At1g75490 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G054102e-23K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9344(8 genes,5 taxa):Arabidopsis thalianaAT1G75490.1
ORTHOMCL9344(8 genes,5 taxa):Brassica oleraceaBol027723
ORTHOMCL9344(8 genes,5 taxa):Brassica oleraceaBol039893
ORTHOMCL9344(8 genes,5 taxa):Brassica rapaBra003752
ORTHOMCL9344(8 genes,5 taxa):Brassica rapaBra015840
ORTHOMCL9344(8 genes,5 taxa):Populus trichocarpaPOPTR_0002s03090.1
ORTHOMCL9344(8 genes,5 taxa):Populus trichocarpaPOPTR_0005s25470.1
ORTHOMCL9344(8 genes,5 taxa):Carica papayaevm.TU.supercontig_99.19
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31966095..34193489 (-)A.thalianaChr1:5891324..7007651 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31441768..34193489 (+)B.rapaA08:2097326..2988508 (+)39
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G754902833550228336706Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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