Basic Information
Gene Model:Bol039892
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000015
Sequence:
 | 
Gene Structure
Nucleotide Length:2368 bp
Transcript Length:1167 bp
Protein Length:388 aa
Strand:+
Location:C06: 32251372 : 32253739
Gene CDSs(6): 1-212 | 300-362 | 454-570 | 909-1329 | 1913-2064 | 2167-2368 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 234 345 9.7e-13Not foundNot found
superfamilySSF103481Multidrug resistance 53 164 6.5e-11Not foundNot found
Segsegseg 59 63 NANot foundNot found
Segsegseg 320 333 NANot foundNot found
HMMPfamPF00892DUF6 209 338 3.9e-16IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 28 161 3.1e-11IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-1325NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q94AP30.0Q94AP3_ARATH Putative nodulin protein OS=Arabidopsis thaliana GN=At1g75500 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3650(12 genes,7 taxa):Arabidopsis thalianaAT1G75500.1
ORTHOMCL3650(12 genes,7 taxa):Brassica oleraceaBol027722
ORTHOMCL3650(12 genes,7 taxa):Brassica oleraceaBol039316
ORTHOMCL3650(12 genes,7 taxa):Brassica oleraceaBol039892
ORTHOMCL3650(12 genes,7 taxa):Brassica rapaBra003751
ORTHOMCL3650(12 genes,7 taxa):Brassica rapaBra008201
ORTHOMCL3650(12 genes,7 taxa):Brassica rapaBra015839
ORTHOMCL3650(12 genes,7 taxa):Oryza sativaOs02t0114100-00
ORTHOMCL3650(12 genes,7 taxa):Populus trichocarpaPOPTR_0002s03060.1
ORTHOMCL3650(12 genes,7 taxa):Populus trichocarpaPOPTR_0005s25500.1
ORTHOMCL3650(12 genes,7 taxa):Sorghum bicolorSb07g023970.1
ORTHOMCL3650(12 genes,7 taxa):Carica papayaevm.TU.supercontig_518.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31966095..34193489 (-)A.thalianaChr1:5891324..7007651 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31441768..34193489 (+)B.rapaA08:2097326..2988508 (+)39
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G755002833778528340241Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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