Basic Information
Gene Model:Bol039878
Gene Family:Plant Defensins Gene Families
Chromosome:C06
Scaffold:Scaffold000015
Sequence:
 | 
Gene Structure
Nucleotide Length:319 bp
Transcript Length:240 bp
Protein Length:79 aa
Strand:-
Location:C06: 32053217 : 32053535
Gene CDSs(2): 1-176 | 256-319 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00505no description 31 79 3.6e-11IPR003614Knottin
Gene3DG3DSA:3.30.30.10no description 29 79 1.7e-17Not foundNot found
PatternScanPS00940GAMMA_THIONIN 30 53 NAIPR008176Gamma thionin
superfamilySSF57095Scorpion toxin-like 29 79 5.9e-15Not foundNot found
Segsegseg 2 23 NANot foundNot found
HMMPfamPF00304Gamma-thionin 30 79 1.8e-24IPR008176Gamma thionin
Gene Ontology
GO TermGO TypeDescription
GO:0006952 Biological Process defense response
Swiss-Prot
Best HitE_value Description
Q393133e-35DEF3_BRANA Defensin-like protein 3 OS=Brassica napus GN=AFP3 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q58QQ06e-34Q58QQ0_BRANA Defensin 1.2 OS=Brassica napus PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31966095..34193489 (-)A.thalianaChr1:5891324..7007651 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31441768..34193489 (+)B.rapaA08:2097326..2988508 (+)39
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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