Basic Information
Gene Model:Bol039799
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000016_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2548 bp
Transcript Length:1203 bp
Protein Length:400 aa
Strand:-
Location:C03: 8669114 : 8671661
Gene CDSs(12): 1-84 | 183-230 | 320-397 | 608-697 | 789-851 | 943-1115 | 1195-1249 | 1576-1606 | 1712-1965 | 2048-2125 | 2204-2329 | 2426-2548 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00170bZIP_1 294 357 1.2e-21IPR011616bZIP transcription factor, bZIP-1
HMMPfamPF07777MFMR 1 199 1.9e-70IPR012900G-box binding, MFMR
Gene3DG3DSA:1.20.5.170no description 297 366 0.00014Not foundNot found
ProfileScanPS50217BZIP 296 359 12.530IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPantherPTHR23351FOS TRANSCRIPTION FA 293 345 3.4e-05Not foundNot found
HMMPantherPTHR23351:SF11JUN DIMERIZATION PRO 293 345 3.4e-05Not foundNot found
Coilcoilcoiled-coil 328 363 NANot foundNot found
Segsegseg 155 169 NANot foundNot found
Segsegseg 180 193 NANot foundNot found
Segsegseg 1 33 NANot foundNot found
PatternScanPS00036BZIP_BASIC 301 316 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
HMMSmartSM00338no description 294 358 1.5e-17IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006351 Biological Process transcription, DNA-dependent
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P239221e-42HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1
TrEMBL
Best HitE_value Description
Q501B21e-159Q501B2_ARATH At2g35530 OS=Arabidopsis thaliana GN=At2g35530 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G355301e-160K09060GBFplant G-box-binding factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27252(2 genes,2 taxa):Brassica oleraceaBol039799
ORTHOMCL27252(2 genes,2 taxa):Brassica rapaBra023012
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8583710..11315567 (+)A.thalianaChr2:14891102..16835711 (+)226
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8562310..11380760 (+)B.rapaA05:19550322..22002536 (-)131
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G355301492296214926591Chr2Subgenome_II249
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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