Basic Information
Gene Model:Bol039787
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C03
Scaffold:Scaffold000016_P2
Sequence:
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Gene Structure
Nucleotide Length:1512 bp
Transcript Length:990 bp
Protein Length:329 aa
Strand:-
Location:C03: 8750413 : 8751924
Gene CDSs(6): 1-231 | 407-529 | 653-746 | 822-904 | 986-1075 | 1144-1512 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00383TYR_PHOSPHATASE_1 160 170 NAIPR016130Protein-tyrosine phosphatase, active site
HMMPfamPF00782DSPc 143 215 4.8e-18IPR000340Dual specificity phosphatase, catalytic domain
HMMPantherPTHR10159DUAL SPECIFICITY PRO 65 315 3.6e-173Not foundNot found
HMMPantherPTHR10159:SF5PTEN-RELATED PHOSPHA 65 315 3.6e-173Not foundNot found
HMMSmartSM00195no description 74 215 6.8e-06IPR020422Dual specificity phosphatase, subgroup, catalytic domain
Segsegseg 3 20 NANot foundNot found
Gene3DG3DSA:3.90.190.10no description 69 212 2.6e-30Not foundNot found
ProfileScanPS50056TYR_PHOSPHATASE_2 139 207 13.191IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 74 199 17.802IPR020422Dual specificity phosphatase, subgroup, catalytic domain
superfamilySSF52799(Phosphotyrosine pro 69 215 4.3e-35Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q86BN82e-26PTPM1_DROME Protein-tyrosine phosphatase mitochondrial 1-like protein OS=Drosophila melanogaster GN=Plip PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9ZQP11e-164Q9ZQP1_ARATH Expressed protein OS=Arabidopsis thaliana GN=dsp8 PE=2 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_4099553e-76K14165K14165--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2465(14 genes,7 taxa):Arabidopsis thalianaAT2G35680.1
ORTHOMCL2465(14 genes,7 taxa):Brassica oleraceaBol037786
ORTHOMCL2465(14 genes,7 taxa):Brassica oleraceaBol039787
ORTHOMCL2465(14 genes,7 taxa):Brassica rapaBra017303
ORTHOMCL2465(14 genes,7 taxa):Vitis viniferaGSVIVT01006270001
ORTHOMCL2465(14 genes,7 taxa):Oryza sativaOs10t0561900-01
ORTHOMCL2465(14 genes,7 taxa):Oryza sativaOs10t0561900-02
ORTHOMCL2465(14 genes,7 taxa):Oryza sativaOs10t0561900-03
ORTHOMCL2465(14 genes,7 taxa):Oryza sativaOs10t0561900-04
ORTHOMCL2465(14 genes,7 taxa):Populus trichocarpaPOPTR_0001s15460.1
ORTHOMCL2465(14 genes,7 taxa):Populus trichocarpaPOPTR_0002s13750.1
ORTHOMCL2465(14 genes,7 taxa):Populus trichocarpaPOPTR_0003s07780.1
ORTHOMCL2465(14 genes,7 taxa):Populus trichocarpaPOPTR_0014s04500.1
ORTHOMCL2465(14 genes,7 taxa):Carica papayaevm.TU.supercontig_89.55
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8583710..11315567 (+)A.thalianaChr2:14891102..16835711 (+)226
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8562310..11380760 (+)B.rapaA05:19550322..22002536 (-)131
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G356801499671314999085Chr2Subgenome_II249
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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