Basic Information
Gene Model:Bol039769
Gene Family:U-box Gene Family
Chromosome:C03
Scaffold:Scaffold000016_P2
Sequence:
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Gene Structure
Nucleotide Length:1227 bp
Transcript Length:1227 bp
Protein Length:408 aa
Strand:-
Location:C03: 8905416 : 8906642
Gene CDSs(1): 1-1227 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00504no description 10 74 5.9e-33IPR003613U box domain
Gene3DG3DSA:3.30.40.10no description 3 81 1.8e-24Not foundNot found
superfamilySSF57850RING/U-box 6 64 2.9e-08Not foundNot found
superfamilySSF48371ARM repeat 48 390 4.2e-21IPR016024Armadillo-type fold
HMMPfamPF04564U-box 6 74 8.6e-37IPR003613U box domain
Segsegseg 376 387 NANot foundNot found
Segsegseg 175 183 NANot foundNot found
HMMPantherPTHR23258:SF447RECEPTOR-LIKE PROTEI 1 74 1.8e-13Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 1 74 1.8e-13Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q84TG30.0PUB23_ARATH U-box domain-containing protein 23 OS=Arabidopsis thaliana GN=PUB23 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9H9K71e-147B9H9K7_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_561154 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_178796e-08K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL497(27 genes,8 taxa):Arabidopsis thalianaAT2G35930.1
ORTHOMCL497(27 genes,8 taxa):Arabidopsis thalianaAT3G52450.1
ORTHOMCL497(27 genes,8 taxa):Brassica oleraceaBol005035
ORTHOMCL497(27 genes,8 taxa):Brassica oleraceaBol009126
ORTHOMCL497(27 genes,8 taxa):Brassica oleraceaBol011695
ORTHOMCL497(27 genes,8 taxa):Brassica oleraceaBol025043
ORTHOMCL497(27 genes,8 taxa):Brassica oleraceaBol037760
ORTHOMCL497(27 genes,8 taxa):Brassica oleraceaBol039769
ORTHOMCL497(27 genes,8 taxa):Brassica rapaBra005309
ORTHOMCL497(27 genes,8 taxa):Brassica rapaBra006925
ORTHOMCL497(27 genes,8 taxa):Brassica rapaBra012803
ORTHOMCL497(27 genes,8 taxa):Brassica rapaBra017278
ORTHOMCL497(27 genes,8 taxa):Brassica rapaBra023044
ORTHOMCL497(27 genes,8 taxa):Brassica rapaBra033430
ORTHOMCL497(27 genes,8 taxa):Vitis viniferaGSVIVT01037585001
ORTHOMCL497(27 genes,8 taxa):Oryza sativaOs02t0539200-01
ORTHOMCL497(27 genes,8 taxa):Oryza sativaOs04t0686000-01
ORTHOMCL497(27 genes,8 taxa):Populus trichocarpaPOPTR_0001s22370.1
ORTHOMCL497(27 genes,8 taxa):Populus trichocarpaPOPTR_0006s21910.1
ORTHOMCL497(27 genes,8 taxa):Populus trichocarpaPOPTR_0009s02150.1
ORTHOMCL497(27 genes,8 taxa):Populus trichocarpaPOPTR_0016s07010.1
ORTHOMCL497(27 genes,8 taxa):Populus trichocarpaPOPTR_0497s00200.1
ORTHOMCL497(27 genes,8 taxa):Sorghum bicolorSb04g022070.1
ORTHOMCL497(27 genes,8 taxa):Sorghum bicolorSb04g022080.1
ORTHOMCL497(27 genes,8 taxa):Sorghum bicolorSb06g033630.1
ORTHOMCL497(27 genes,8 taxa):Carica papayaevm.TU.supercontig_103.14
ORTHOMCL497(27 genes,8 taxa):Carica papayaevm.TU.supercontig_104.18
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8583710..11315567 (+)A.thalianaChr2:14891102..16835711 (+)226
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8884096..9884630 (+)B.rapaA09:10284578..11176845 (+)26
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G359301508285515084473Chr2Subgenome_II249
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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