Basic Information
Gene Model:Bol039644
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000016_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:3299 bp
Transcript Length:1413 bp
Protein Length:470 aa
Strand:+
Location:C01: 12779120 : 12782418
Gene CDSs(14): 1-160 | 249-340 | 558-627 | 934-1046 | 1251-1347 | 1552-1631 | 1772-1966 | 2066-2149 | 2240-2300 | 2416-2476 | 2574-2667 | 2740-2812 | 2979-3061 | 3150-3299 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.2020no description 246 468 4.7e-69Not foundNot found
Gene3DG3DSA:3.40.50.300no description 47 243 6e-59Not foundNot found
Segsegseg 349 358 NANot foundNot found
HMMTigrTIGR00235udk: uridine kinase 43 250 2.2e-84IPR000764Uridine kinase
HMMPfamPF00485PRK 52 237 2.1e-53IPR006083Phosphoribulokinase/uridine kinase
HMMPantherPTHR10285URIDINE KINASE RELAT 58 469 3.3e-229Not foundNot found
HMMPantherPTHR10285:SF6URIDINE CYTIDINE KIN 58 469 3.3e-229IPR000764Uridine kinase
superfamilySSF52540P-loop containing nu 49 251 2e-59Not foundNot found
superfamilySSF53271PRTase-like 246 468 1.9e-61Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005524 Molecular Function ATP binding
GO:0008152 Biological Process metabolic process
GO:0016301 Molecular Function kinase activity
GO:0016773 Molecular Function phosphotransferase activity, alcohol group as acceptor
Swiss-Prot
Best HitE_value Description
Q9NWZ51e-115UCKL1_HUMAN Uridine-cytidine kinase-like 1 OS=Homo sapiens GN=UCKL1 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q8LD950.0Q8LD95_ARATH Uridine kinase OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G265100.0K00876E2.7.1.48, udkuridine kinase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT1G55810.1
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT3G27190.1
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT3G27440.1
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT4G26510.1
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT5G40870.1
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol006254
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol012950
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol031146
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol032223
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol039644
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol042865
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra002854
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra025256
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra025537
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra026427
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra030832
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra032986
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra039077
ORTHOMCL253(37 genes,8 taxa):Vitis viniferaGSVIVT01008517001
ORTHOMCL253(37 genes,8 taxa):Vitis viniferaGSVIVT01014838001
ORTHOMCL253(37 genes,8 taxa):Vitis viniferaGSVIVT01032376001
ORTHOMCL253(37 genes,8 taxa):Oryza sativaOs02t0273000-01
ORTHOMCL253(37 genes,8 taxa):Oryza sativaOs08t0530000-01
ORTHOMCL253(37 genes,8 taxa):Oryza sativaOs09t0505800-01
ORTHOMCL253(37 genes,8 taxa):Oryza sativaOs11t0265000-01
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s33950.1
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s47190.1
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s47190.2
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0011s16790.1
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0017s09850.1
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0017s10740.1
ORTHOMCL253(37 genes,8 taxa):Sorghum bicolorSb02g029240.1
ORTHOMCL253(37 genes,8 taxa):Sorghum bicolorSb04g000210.1
ORTHOMCL253(37 genes,8 taxa):Sorghum bicolorSb07g026320.1
ORTHOMCL253(37 genes,8 taxa):Sorghum bicolorSb08g023067.1
ORTHOMCL253(37 genes,8 taxa):Carica papayaevm.TU.supercontig_12.103
ORTHOMCL253(37 genes,8 taxa):Carica papayaevm.TU.supercontig_130.72
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:11947061..13165038 (-)A.thalianaChr5:22561941..23203792 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:11854750..14004199 (+)B.rapaA10:9475493..11621884 (+)51
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G265101338406213388290Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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