Basic Information
Gene Model:Bol039593
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000016_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1552 bp
Transcript Length:1263 bp
Protein Length:420 aa
Strand:-
Location:C01: 12337735 : 12339286
Gene CDSs(4): 1-359 | 449-554 | 660-950 | 1046-1552 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 111 412 3.1e-75IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 158 166 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 90 420 6.3e-154Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 90 420 6.3e-154IPR015655Protein phosphatase 2C
Segsegseg 70 78 NANot foundNot found
HMMSmartSM00332no description 104 406 5.5e-112IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 93 413 2e-76IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 113 401 5.7e-97IPR014045Protein phosphatase 2C, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
P495970.0P2C56_ARATH Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9HDB41e-123B9HDB4_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1081359 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G260800.0K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11840(7 genes,4 taxa):Arabidopsis thalianaAT4G26080.1
ORTHOMCL11840(7 genes,4 taxa):Brassica oleraceaBol039593
ORTHOMCL11840(7 genes,4 taxa):Brassica oleraceaBol042273
ORTHOMCL11840(7 genes,4 taxa):Brassica rapaBra010441
ORTHOMCL11840(7 genes,4 taxa):Brassica rapaBra013945
ORTHOMCL11840(7 genes,4 taxa):Brassica rapaBra019121
ORTHOMCL11840(7 genes,4 taxa):Carica papayaevm.TU.supercontig_371.5
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:11947061..13165038 (-)A.thalianaChr5:22561941..23203792 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:11854750..14004199 (+)B.rapaA10:9475493..11621884 (+)51
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G260801321996113222284Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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