Basic Information
Gene Model:Bol039459
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C01
Scaffold:Scaffold000016_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2517 bp
Transcript Length:879 bp
Protein Length:292 aa
Strand:-
Location:C01: 11108185 : 11110701
Gene CDSs(10): 1-84 | 176-248 | 426-493 | 594-681 | 970-1044 | 1127-1166 | 1373-1469 | 1961-2068 | 2150-2245 | 2368-2517 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.250.10no description 103 224 1.7e-10IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 85 227 1.3e-13IPR001763Rhodanese-like
HMMPantherPTHR13253FAMILY NOT NAMED 165 222 2.8e-06Not foundNot found
HMMPantherPTHR13253:SF8gb def: CG6000-PA, i 165 222 2.8e-06Not foundNot found
HMMSmartSM00450no description 91 221 5e-13IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 101 224 13.329IPR001763Rhodanese-like
Segsegseg 39 55 NANot foundNot found
Segsegseg 3 19 NANot foundNot found
Segsegseg 24 36 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q0WWT71e-150Q0WWT7_ARATH Putative uncharacterized protein At4g24750 OS=Arabidopsis thaliana GN=At4g24750 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10249(8 genes,8 taxa):Arabidopsis thalianaAT4G24750.1
ORTHOMCL10249(8 genes,8 taxa):Brassica oleraceaBol039459
ORTHOMCL10249(8 genes,8 taxa):Brassica rapaBra013830
ORTHOMCL10249(8 genes,8 taxa):Vitis viniferaGSVIVT01007604001
ORTHOMCL10249(8 genes,8 taxa):Oryza sativaOs02t0596000-01
ORTHOMCL10249(8 genes,8 taxa):Populus trichocarpaPOPTR_0015s09770.1
ORTHOMCL10249(8 genes,8 taxa):Sorghum bicolorSb04g024890.1
ORTHOMCL10249(8 genes,8 taxa):Carica papayaevm.TU.supercontig_159.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7418478..14237322 (+)A.thalianaChr4:11126151..13975908 (+)479
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:10617318..11949007 (+)B.rapaA08:5356637..5796752 (-)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G247501275821412760908Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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