Basic Information
Gene Model:Bol039337
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000017
Sequence:
 | 
Gene Structure
Nucleotide Length:2832 bp
Transcript Length:1467 bp
Protein Length:488 aa
Strand:-
Location:C02: 17774386 : 17777217
Gene CDSs(17): 1-195 | 306-368 | 455-544 | 638-697 | 763-828 | 926-991 | 1073-1148 | 1223-1287 | 1367-1459 | 1554-1637 | 1726-1810 | 1898-2007 | 2106-2165 | 2237-2302 | 2383-2442 | 2528-2642 | 2720-2832 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR00879SP: MFS transporter, 4 483 4.7e-87IPR003663Sugar/inositol transporter
HMMPantherPTHR11600SUGAR TRANSPORTER 4 347 4.6e-160Not foundNot found
HMMPantherPTHR11600:SF74SUGAR TRANSPORTER PL 4 347 4.6e-160Not foundNot found
ProfileScanPS50850MFS 51 476 45.130Not foundNot found
superfamilySSF103473MFS general substrat 35 484 2.2e-60IPR016196Major facilitator superfamily, general substrate transporter
HMMPfamPF00083Sugar_tr 51 487 3.3e-107IPR005828General substrate transporter
PatternScanPS00216SUGAR_TRANSPORT_1 105 122 NAIPR005829Sugar transporter, conserved site
PatternScanPS00217SUGAR_TRANSPORT_2 147 172 NAIPR005829Sugar transporter, conserved site
Segsegseg 287 304 NANot foundNot found
Segsegseg 385 400 NANot foundNot found
Segsegseg 26 39 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q9FRL30.0ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9R7V20.0B9R7V2_RICCO Sugar transporter, putative OS=Ricinus communis GN=RCOM_1594440 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15944400.0K08145SLC2A8, GLUT8MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL778(22 genes,8 taxa):Arabidopsis thalianaAT1G19450.1
ORTHOMCL778(22 genes,8 taxa):Arabidopsis thalianaAT1G75220.1
ORTHOMCL778(22 genes,8 taxa):Brassica oleraceaBol026859
ORTHOMCL778(22 genes,8 taxa):Brassica oleraceaBol027745
ORTHOMCL778(22 genes,8 taxa):Brassica oleraceaBol039337
ORTHOMCL778(22 genes,8 taxa):Brassica oleraceaBol039900
ORTHOMCL778(22 genes,8 taxa):Brassica rapaBra003761
ORTHOMCL778(22 genes,8 taxa):Brassica rapaBra008184
ORTHOMCL778(22 genes,8 taxa):Brassica rapaBra015858
ORTHOMCL778(22 genes,8 taxa):Brassica rapaBra025740
ORTHOMCL778(22 genes,8 taxa):Vitis viniferaGSVIVT01009719001
ORTHOMCL778(22 genes,8 taxa):Vitis viniferaGSVIVT01018949001
ORTHOMCL778(22 genes,8 taxa):Oryza sativaOs05t0567800-02
ORTHOMCL778(22 genes,8 taxa):Oryza sativaOs05t0579000-01
ORTHOMCL778(22 genes,8 taxa):Populus trichocarpaPOPTR_0002s26150.1
ORTHOMCL778(22 genes,8 taxa):Populus trichocarpaPOPTR_0007s12950.1
ORTHOMCL778(22 genes,8 taxa):Sorghum bicolorSb09g028810.1
ORTHOMCL778(22 genes,8 taxa):Sorghum bicolorSb09g028820.1
ORTHOMCL778(22 genes,8 taxa):Sorghum bicolorSb09g028840.1
ORTHOMCL778(22 genes,8 taxa):Sorghum bicolorSb09g029520.1
ORTHOMCL778(22 genes,8 taxa):Carica papayaevm.TU.supercontig_6.117
ORTHOMCL778(22 genes,8 taxa):Carica papayaevm.TU.supercontig_925.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:17696373..18938805 (+)A.thalianaChr1:6622094..7160526 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:16467816..18683313 (+)B.rapaA08:2334160..2866262 (-)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G752202822915728232831Chr1Subgenome_I379
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo