Basic Information
Gene Model:Bol039317
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000017
Sequence:
 | 
Gene Structure
Nucleotide Length:603 bp
Transcript Length:603 bp
Protein Length:200 aa
Strand:+
Location:C02: 18093568 : 18094170
Gene CDSs(1): 1-603 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 32 89 22.062IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 117 134 NANot foundNot found
Gene3DG3DSA:3.30.730.10no description 31 92 1e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 31 82 1.9e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 31 92 2.2e-23IPR016177DNA-binding, integrase-type
HMMSmartSM00380no description 32 95 7e-34IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LQZ26e-87DRE2D_ARATH Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1
TrEMBL
Best HitE_value Description
A0JQ721e-85A0JQ72_ARATH At1g75490 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G054102e-22K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL20175(3 genes,3 taxa):Brassica oleraceaBol039317
ORTHOMCL20175(3 genes,3 taxa):Brassica rapaBra008200
ORTHOMCL20175(3 genes,3 taxa):Sorghum bicolorSb07g023575.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:17696373..18938805 (+)A.thalianaChr1:6622094..7160526 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:16467816..18683313 (+)B.rapaA08:2334160..2866262 (-)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G754902833550228336706Chr1Subgenome_I379
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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