Basic Information
Gene Model:Bol039278
Gene Family:Plant Defensins Gene Families
Chromosome:C02
Scaffold:Scaffold000017
Sequence:
 | 
Gene Structure
Nucleotide Length:168 bp
Transcript Length:168 bp
Protein Length:55 aa
Strand:+
Location:C02: 18568251 : 18568418
Gene CDSs(1): 1-168 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00940GAMMA_THIONIN 6 29 NAIPR008176Gamma thionin
HMMSmartSM00505no description 7 55 1.6e-11IPR003614Knottin
HMMPfamPF00304Gamma-thionin 6 55 4.8e-25IPR008176Gamma thionin
Gene3DG3DSA:3.30.30.10no description 5 55 6.2e-18Not foundNot found
superfamilySSF57095Scorpion toxin-like 5 55 5.2e-15Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006952 Biological Process defense response
Swiss-Prot
Best HitE_value Description
P692414e-27DEF1_RAPSA Defensin-like protein 1 OS=Raphanus sativus GN=AFP1 PE=1 SV=1
TrEMBL
Best HitE_value Description
A7X6E06e-26A7X6E0_BRAJU Defensin OS=Brassica juncea PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:17696373..18938805 (+)A.thalianaChr1:6622094..7160526 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:16467816..18683313 (+)B.rapaA08:2334160..2866262 (-)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G758302847235728472891Chr1Subgenome_I379
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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