Basic Information
Gene Model:Bol039220
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000017
Sequence:
 | 
Gene Structure
Nucleotide Length:585 bp
Transcript Length:585 bp
Protein Length:194 aa
Strand:+
Location:C02: 19241626 : 19242210
Gene CDSs(1): 1-585 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 81 102 NANot foundNot found
Segsegseg 103 121 NANot foundNot found
Segsegseg 139 151 NANot foundNot found
HMMPfamPF01988DUF125 25 188 3.2e-64IPR008217Protein of unknown function DUF125, transmembrane
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P163132e-55NO21_SOYBN Nodulin-21 OS=Glycine max PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SRD31e-86Q9SRD3_ARATH Nodulin-like protein; 66117-66707 OS=Arabidopsis thaliana GN=At1g76800 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27189(2 genes,2 taxa):Brassica oleraceaBol039220
ORTHOMCL27189(2 genes,2 taxa):Brassica rapaBra008277
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:14474580..19426376 (+)A.thalianaChr1:26932905..28884566 (+)202
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:18935599..20684858 (+)B.rapaA08:1852719..2272763 (-)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G768002882930828830277Chr1Subgenome_I379
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo