Basic Information
Gene Model:Bol039132
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000018
Sequence:
 | 
Gene Structure
Nucleotide Length:537 bp
Transcript Length:537 bp
Protein Length:178 aa
Strand:+
Location:C06: 21552790 : 21553326
Gene CDSs(1): 1-537 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 20 77 24.157IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 19 70 1.9e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 19 80 3.3e-23IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 122 131 NANot foundNot found
Segsegseg 94 107 NANot foundNot found
Segsegseg 51 70 NANot foundNot found
superfamilySSF54171DNA-binding domain 19 80 6.2e-23IPR016177DNA-binding, integrase-type
HMMSmartSM00380no description 20 83 5e-36IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803401e-43ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8S2S72e-51Q8S2S7_THEHA Ethylene responsive element binding factor 4-like protein OS=Thellungiella halophila PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G152102e-43K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27176(2 genes,2 taxa):Brassica oleraceaBol039132
ORTHOMCL27176(2 genes,2 taxa):Brassica rapaBra039658
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:19999909..22374021 (+)A.thalianaChr3:4331756..5418445 (+)61
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:19717869..22113791 (+)B.rapaA08:18160589..19427861 (+)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G531701982133719822252Chr1Subgenome_III(LF)132
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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