Basic Information
Gene Model:Bol039093
Gene Family:Protein Kinase Gene Families
Chromosome:C06
Scaffold:Scaffold000018
Sequence:
 | 
Gene Structure
Nucleotide Length:3808 bp
Transcript Length:2100 bp
Protein Length:699 aa
Strand:-
Location:C06: 21127684 : 21131491
Gene CDSs(13): 1-69 | 224-380 | 454-995 | 1571-2189 | 2266-2328 | 2412-2477 | 2557-2628 | 2716-2787 | 2868-2939 | 3017-3082 | 3169-3240 | 3310-3442 | 3712-3808 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 421 699 33.446IPR000719Protein kinase, catalytic domain
HMMSmartSM00219no description 421 694 6e-12IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 421 699 5.8e-15IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00369no description 165 188 15IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 189 211 52IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 95 123 22IPR003591Leucine-rich repeat, typical subtype
HMMPfamPF00560LRR_1 191 212 0.015IPR001611Leucine-rich repeat
HMMPfamPF00069Pkinase 421 636 1.8e-27IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF08263LRRNT_2 29 70 2.4e-12IPR013210Leucine-rich repeat, N-terminal
HMMPfamPF00560LRR_1 143 165 1.2IPR001611Leucine-rich repeat
Gene3DG3DSA:1.10.510.10no description 501 688 1.6e-34Not foundNot found
Gene3DG3DSA:3.30.200.20no description 375 498 1.6e-19Not foundNot found
Gene3DG3DSA:3.80.10.10no description 26 234 8e-39Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 77 600 4.7e-228Not foundNot found
HMMPantherPTHR23258:SF463STRUBBELIG RECEPTOR 77 600 4.7e-228Not foundNot found
PatternScanPS00107PROTEIN_KINASE_ATP 427 450 NAIPR017441Protein kinase, ATP binding site
Segsegseg 246 272 NANot foundNot found
Segsegseg 275 319 NANot foundNot found
Segsegseg 320 333 NANot foundNot found
Segsegseg 6 17 NANot foundNot found
superfamilySSF52058L domain-like 26 232 5.2e-42Not foundNot found
superfamilySSF56112Protein kinase-like 391 678 3.4e-63IPR011009Protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9C8M90.0SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q079I00.0Q079I0_ISATI Leucine-rich repeat transmembrane protein kinase OS=Isatis tinctoria PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_4134522e-64K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G53730.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G78980.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13062.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13065.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT4G22130.1
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol005080
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010246
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010626
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol011822
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015780
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015781
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol028489
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035140
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035507
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol038497
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol039093
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra001486
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra013591
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra021551
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra027347
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra030923
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra034709
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra035080
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039367
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039687
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01004806001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01016654001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029461001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029462001
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0190500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0468400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0397700-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs06t0634500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs09t0559900-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs10t0389800-01
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0001s16170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0003s07130.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15160.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.2
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.3
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00330.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00340.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g024160.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g033190.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g045010.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g032710.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g039370.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g006110.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g017500.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb10g024830.1
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.11
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.7
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_152.50
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_229.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:19999909..22374021 (+)A.thalianaChr3:4331756..5418445 (+)61
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:19717869..22113791 (+)B.rapaA08:18160589..19427861 (+)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G537302006170120065713Chr1Subgenome_III(LF)132
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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