Basic Information
Gene Model:Bol038934
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C09
Scaffold:Scaffold000019
Sequence:
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Gene Structure
Nucleotide Length:2748 bp
Transcript Length:1401 bp
Protein Length:466 aa
Strand:-
Location:C09: 23607526 : 23610273
Gene CDSs(11): 1-390 | 473-589 | 668-786 | 882-990 | 1084-1122 | 1210-1288 | 1374-1448 | 1551-1615 | 1741-1796 | 1922-2014 | 2490-2748 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.720no description 63 313 2.5e-79IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.250.10no description 348 461 4.9e-18IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 340 464 9e-20IPR001763Rhodanese-like
superfamilySSF69572Activating enzymes o 64 312 2.3e-103IPR009036Molybdenum cofactor biosynthesis, MoeB
HMMPantherPTHR10953UBIQUITIN-ACTIVATING 23 346 1e-80Not foundNot found
ProfileScanPS50206RHODANESE_3 360 464 16.827IPR001763Rhodanese-like
Coilcoilcoiled-coil 388 409 NANot foundNot found
Coilcoilcoiled-coil 8 43 NANot foundNot found
HMMSmartSM00450no description 350 461 6.5e-21IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 350 458 3.1e-05IPR001763Rhodanese-like
HMMPfamPF05237MoeZ_MoeB 229 315 2.7e-42IPR007901MoeZ/MoeB
HMMPfamPF00899ThiF 92 226 9.2e-68IPR000594UBA/THIF-type NAD/FAD binding fold
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005488 Molecular Function binding
GO:0008152 Biological Process metabolic process
Swiss-Prot
Best HitE_value Description
Q9ZNW00.0MOCS3_ARATH Adenylyltransferase and sulfurtransferase MOCS3 OS=Arabidopsis thaliana GN=MOCS3 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q2V2Y40.0Q2V2Y4_ARATH AT5G55130 protein OS=Arabidopsis thaliana GN=AT5G55130 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G551300.0K11996MOCS3, UBA4, moeBadenylyltransferase and sulfurtransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4209(12 genes,8 taxa):Arabidopsis thalianaAT5G55130.1
ORTHOMCL4209(12 genes,8 taxa):Brassica oleraceaBol018220
ORTHOMCL4209(12 genes,8 taxa):Brassica oleraceaBol038934
ORTHOMCL4209(12 genes,8 taxa):Brassica rapaBra002930
ORTHOMCL4209(12 genes,8 taxa):Brassica rapaBra035556
ORTHOMCL4209(12 genes,8 taxa):Vitis viniferaGSVIVT01037705001
ORTHOMCL4209(12 genes,8 taxa):Oryza sativaOs02t0525400-01
ORTHOMCL4209(12 genes,8 taxa):Oryza sativaOs02t0804600-00
ORTHOMCL4209(12 genes,8 taxa):Populus trichocarpaPOPTR_0001s36580.1
ORTHOMCL4209(12 genes,8 taxa):Sorghum bicolorSb04g030190.1
ORTHOMCL4209(12 genes,8 taxa):Sorghum bicolorSb10g004850.1
ORTHOMCL4209(12 genes,8 taxa):Carica papayaevm.TU.supercontig_12.259
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:21416210..23867302 (+)A.thalianaChr5:21780947..22436699 (+)93
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:21472141..23867302 (+)B.rapaA10:10775642..11777041 (-)99
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G551302237318022376086Chr5Subgenome_III(LF)311
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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