Basic Information
Gene Model:Bol038902
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000019
Sequence:
 | 
Gene Structure
Nucleotide Length:1947 bp
Transcript Length:1245 bp
Protein Length:414 aa
Strand:+
Location:C09: 23268578 : 23270524
Gene CDSs(5): 1-492 | 813-1038 | 1145-1367 | 1548-1761 | 1858-1947 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11132SOLUTE CARRIER FAMIL 65 385 1.1e-107Not foundNot found
superfamilySSF103481Multidrug resistance 283 388 7.3e-05Not foundNot found
superfamilySSF103481Multidrug resistance 130 233 1.6e-06Not foundNot found
HMMTigrTIGR00817tpt: Tpt phosphate/p 95 393 5.7e-162IPR004696Tpt phosphate/phosphoenolpyruvate translocator
HMMPfamPF03151TPT 240 385 3.8e-54IPR004853Protein of unknown function DUF250
HMMPfamPF00892DUF6 113 231 8.3e-06IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 398 409 NANot foundNot found
Segsegseg 351 360 NANot foundNot found
Segsegseg 258 270 NANot foundNot found
Segsegseg 127 141 NANot foundNot found
Segsegseg 16 33 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q9M5A90.0GPT1_ARATH Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q0WW770.0Q0WW77_ARATH Glucose-6-phosphate/phosphate translocator OS=Arabidopsis thaliana GN=At5g54800 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pon:1004475058e-18K08818CDC2Lcell division cycle 2-like
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5383(11 genes,5 taxa):Arabidopsis thalianaAT5G54800.1
ORTHOMCL5383(11 genes,5 taxa):Brassica oleraceaBol018240
ORTHOMCL5383(11 genes,5 taxa):Brassica oleraceaBol027934
ORTHOMCL5383(11 genes,5 taxa):Brassica oleraceaBol038902
ORTHOMCL5383(11 genes,5 taxa):Brassica rapaBra002955
ORTHOMCL5383(11 genes,5 taxa):Brassica rapaBra022745
ORTHOMCL5383(11 genes,5 taxa):Brassica rapaBra029005
ORTHOMCL5383(11 genes,5 taxa):Populus trichocarpaPOPTR_0001s44610.1
ORTHOMCL5383(11 genes,5 taxa):Populus trichocarpaPOPTR_0011s13920.1
ORTHOMCL5383(11 genes,5 taxa):Populus trichocarpaPOPTR_0011s13920.2
ORTHOMCL5383(11 genes,5 taxa):Carica papayaevm.TU.supercontig_97.45
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:21416210..23867302 (+)A.thalianaChr5:21780947..22436699 (+)93
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:21472141..23867302 (+)B.rapaA10:10775642..11777041 (-)99
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G548002226127122263921Chr5Subgenome_III(LF)311
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo