Basic Information
Gene Model:Bol038751
Gene Family:Protein Kinase Gene Families
Chromosome:C09
Scaffold:Scaffold000019
Sequence:
 | 
Gene Structure
Nucleotide Length:2975 bp
Transcript Length:1626 bp
Protein Length:541 aa
Strand:-
Location:C09: 21060512 : 21063486
Gene CDSs(13): 1-161 | 251-307 | 383-467 | 559-606 | 726-839 | 982-1113 | 1209-1293 | 1469-1548 | 1655-1874 | 1960-2201 | 2293-2376 | 2474-2648 | 2833-2975 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00219no description 93 378 3.5e-08IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00133no description 393 457 0.0003IPR000961AGC-kinase, C-terminal
HMMSmartSM00220no description 93 392 3.5e-105IPR002290Serine/threonine-protein kinase domain
PatternScanPS00108PROTEIN_KINASE_ST 212 224 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 99 122 NAIPR017441Protein kinase, ATP binding site
HMMPantherPTHR22985SERINE/THREONINE PRO 49 485 0Not foundNot found
HMMPantherPTHR22985:SF32SERINE/THREONINE-PRO 49 485 0Not foundNot found
Segsegseg 3 21 NANot foundNot found
Segsegseg 425 436 NANot foundNot found
superfamilySSF56112Protein kinase-like 68 419 2.3e-87IPR011009Protein kinase-like domain
HMMPfamPF00433Pkinase_C 410 459 3.3e-14IPR017892Protein kinase, C-terminal
HMMPfamPF00069Pkinase 93 392 7.8e-85IPR017442Serine/threonine-protein kinase-like domain
ProfileScanPS51285AGC_KINASE_CTER 393 465 13.959IPR000961AGC-kinase, C-terminal
ProfileScanPS50011PROTEIN_KINASE_DOM 93 392 47.891IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:1.10.510.10no description 145 412 8.3e-64Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q5R8M11e-117STK38_PONAB Serine/threonine-protein kinase 38 OS=Pongo abelii GN=STK38 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q1PF340.0Q1PF34_ARATH Protein kinase OS=Arabidopsis thaliana GN=At2g20470 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002528870.0K08790STK38, NDRserine/threonine kinase 38
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL93(63 genes,8 taxa):Arabidopsis thalianaAT1G03920.1
ORTHOMCL93(63 genes,8 taxa):Arabidopsis thalianaAT1G30640.1
ORTHOMCL93(63 genes,8 taxa):Arabidopsis thalianaAT2G19400.1
ORTHOMCL93(63 genes,8 taxa):Arabidopsis thalianaAT2G20470.1
ORTHOMCL93(63 genes,8 taxa):Arabidopsis thalianaAT3G23310.1
ORTHOMCL93(63 genes,8 taxa):Arabidopsis thalianaAT4G14350.1
ORTHOMCL93(63 genes,8 taxa):Arabidopsis thalianaAT4G33080.1
ORTHOMCL93(63 genes,8 taxa):Arabidopsis thalianaAT5G09890.2
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol000320
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol007375
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol009944
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol013546
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol014607
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol016102
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol022717
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol029799
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol037270
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol038751
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol040856
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol044152
ORTHOMCL93(63 genes,8 taxa):Brassica oleraceaBol045898
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra010763
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra011411
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra014937
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra015279
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra031123
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra031468
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra032411
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra033489
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra036473
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra036723
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra038998
ORTHOMCL93(63 genes,8 taxa):Brassica rapaBra040471
ORTHOMCL93(63 genes,8 taxa):Vitis viniferaGSVIVT01009489001
ORTHOMCL93(63 genes,8 taxa):Vitis viniferaGSVIVT01015159001
ORTHOMCL93(63 genes,8 taxa):Vitis viniferaGSVIVT01021759001
ORTHOMCL93(63 genes,8 taxa):Vitis viniferaGSVIVT01027833001
ORTHOMCL93(63 genes,8 taxa):Vitis viniferaGSVIVT01028361001
ORTHOMCL93(63 genes,8 taxa):Vitis viniferaGSVIVT01035418001
ORTHOMCL93(63 genes,8 taxa):Oryza sativaOs01t0186700-01
ORTHOMCL93(63 genes,8 taxa):Oryza sativaOs05t0511400-01
ORTHOMCL93(63 genes,8 taxa):Oryza sativaOs10t0476100-00
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0002s03750.1
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0002s03750.2
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0002s12740.1
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0005s24840.1
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s14890.1
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s14890.2
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s14890.3
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0006s24120.1
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0008s16760.1
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0010s08130.1
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0011s16040.1
ORTHOMCL93(63 genes,8 taxa):Populus trichocarpaPOPTR_0014s02890.1
ORTHOMCL93(63 genes,8 taxa):Sorghum bicolorSb01g019410.1
ORTHOMCL93(63 genes,8 taxa):Sorghum bicolorSb03g003320.1
ORTHOMCL93(63 genes,8 taxa):Sorghum bicolorSb08g020960.2
ORTHOMCL93(63 genes,8 taxa):Sorghum bicolorSb09g005720.1
ORTHOMCL93(63 genes,8 taxa):Sorghum bicolorSb09g025200.1
ORTHOMCL93(63 genes,8 taxa):Carica papayaevm.TU.supercontig_165.21
ORTHOMCL93(63 genes,8 taxa):Carica papayaevm.TU.supercontig_49.23
ORTHOMCL93(63 genes,8 taxa):Carica papayaevm.TU.supercontig_678.1
ORTHOMCL93(63 genes,8 taxa):Carica papayaevm.TU.supercontig_7.126
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:20937150..21381907 (+)A.thalianaChr2:8779735..8942689 (+)25
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:20937150..21835170 (+)B.rapaA07:728035..929853 (+)28
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G2047088262778829497Chr2Subgenome_III(LF)24
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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