Basic Information
Gene Model:Bol038635
Gene Family:Protein Kinase Gene Families
Chromosome:C04
Scaffold:Scaffold000020_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:6013 bp
Transcript Length:3831 bp
Protein Length:1276 aa
Strand:+
Location:C04: 13856851 : 13862863
Gene CDSs(17): 1-685 | 968-1011 | 1111-1293 | 1374-2726 | 2807-2979 | 3091-3334 | 3479-3571 | 3643-3783 | 3855-3947 | 4129-4324 | 4549-4634 | 4772-4860 | 5138-5189 | 5269-5325 | 5409-5585 | 5718-5795 | 5927-6013 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.10.510.10no description 917 1171 5.9e-65Not foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 984 996 NAIPR008271Serine/threonine-protein kinase, active site
HMMPantherPTHR22985:SF87SERINE/THREONINE-PRO 557 1270 0Not foundNot found
HMMPantherPTHR22985SERINE/THREONINE PRO 557 1270 0Not foundNot found
HMMPfamPF00069Pkinase 865 1151 5.4e-89IPR017442Serine/threonine-protein kinase-like domain
Segsegseg 1200 1228 NANot foundNot found
Segsegseg 475 486 NANot foundNot found
Segsegseg 724 737 NANot foundNot found
Segsegseg 438 447 NANot foundNot found
Segsegseg 222 232 NANot foundNot found
Segsegseg 153 168 NANot foundNot found
Segsegseg 202 219 NANot foundNot found
Segsegseg 4 56 NANot foundNot found
superfamilySSF56112Protein kinase-like 840 1178 1e-89IPR011009Protein kinase-like domain
ProfileScanPS50011PROTEIN_KINASE_DOM 865 1151 52.697IPR000719Protein kinase, catalytic domain
ProfileScanPS51285AGC_KINASE_CTER 1152 1257 9.902IPR000961AGC-kinase, C-terminal
HMMSmartSM00220no description 865 1151 1.9e-102IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 865 1151 1.2e-12IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q559T81e-100Y0701_DICDI Probable serine/threonine-protein kinase DDB_G0272282 OS=Dictyostelium discoideum GN=DDB_G0272282 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q8GZ400.0Q8GZ40_ARATH Putative uncharacterized protein At3g17850/MEB5_7 OS=Arabidopsis thaliana GN=At3g17850/MEB5_7 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cre:CHLREDRAFT_1150251e-107K08789MASTmicrotubule-associated serine/threonine kinase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL252(37 genes,8 taxa):Arabidopsis thalianaAT1G45160.2
ORTHOMCL252(37 genes,8 taxa):Arabidopsis thalianaAT1G48490.1
ORTHOMCL252(37 genes,8 taxa):Arabidopsis thalianaAT3G17850.1
ORTHOMCL252(37 genes,8 taxa):Arabidopsis thalianaAT5G62310.1
ORTHOMCL252(37 genes,8 taxa):Brassica oleraceaBol020680
ORTHOMCL252(37 genes,8 taxa):Brassica oleraceaBol021892
ORTHOMCL252(37 genes,8 taxa):Brassica oleraceaBol024802
ORTHOMCL252(37 genes,8 taxa):Brassica oleraceaBol030892
ORTHOMCL252(37 genes,8 taxa):Brassica oleraceaBol037047
ORTHOMCL252(37 genes,8 taxa):Brassica oleraceaBol038635
ORTHOMCL252(37 genes,8 taxa):Brassica oleraceaBol045141
ORTHOMCL252(37 genes,8 taxa):Brassica rapaBra010074
ORTHOMCL252(37 genes,8 taxa):Brassica rapaBra014042
ORTHOMCL252(37 genes,8 taxa):Brassica rapaBra014141
ORTHOMCL252(37 genes,8 taxa):Brassica rapaBra018730
ORTHOMCL252(37 genes,8 taxa):Brassica rapaBra021278
ORTHOMCL252(37 genes,8 taxa):Brassica rapaBra022251
ORTHOMCL252(37 genes,8 taxa):Vitis viniferaGSVIVT01008473001
ORTHOMCL252(37 genes,8 taxa):Vitis viniferaGSVIVT01009685001
ORTHOMCL252(37 genes,8 taxa):Vitis viniferaGSVIVT01018574001
ORTHOMCL252(37 genes,8 taxa):Oryza sativaOs03t0711800-01
ORTHOMCL252(37 genes,8 taxa):Oryza sativaOs03t0711800-02
ORTHOMCL252(37 genes,8 taxa):Oryza sativaOs03t0711800-03
ORTHOMCL252(37 genes,8 taxa):Oryza sativaOs12t0621500-01
ORTHOMCL252(37 genes,8 taxa):Populus trichocarpaPOPTR_0002s26380.1
ORTHOMCL252(37 genes,8 taxa):Populus trichocarpaPOPTR_0002s26380.2
ORTHOMCL252(37 genes,8 taxa):Populus trichocarpaPOPTR_0002s26380.3
ORTHOMCL252(37 genes,8 taxa):Populus trichocarpaPOPTR_0002s26380.4
ORTHOMCL252(37 genes,8 taxa):Populus trichocarpaPOPTR_0012s04190.1
ORTHOMCL252(37 genes,8 taxa):Populus trichocarpaPOPTR_0012s04190.2
ORTHOMCL252(37 genes,8 taxa):Populus trichocarpaPOPTR_0012s14530.1
ORTHOMCL252(37 genes,8 taxa):Populus trichocarpaPOPTR_0015s04900.1
ORTHOMCL252(37 genes,8 taxa):Populus trichocarpaPOPTR_0015s14590.1
ORTHOMCL252(37 genes,8 taxa):Sorghum bicolorSb01g010330.1
ORTHOMCL252(37 genes,8 taxa):Sorghum bicolorSb08g022050.1
ORTHOMCL252(37 genes,8 taxa):Carica papayaevm.TU.supercontig_3.297
ORTHOMCL252(37 genes,8 taxa):Carica papayaevm.TU.supercontig_3.373
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:13073262..13891105 (+)B.rapaA05:11075795..11772647 (-)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1785061097056116458Chr3Subgenome_III(LF)52
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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