Basic Information
Gene Model:Bol038555
Gene Family:Protein Kinase Gene Families
Chromosome:C06
Scaffold:Scaffold000020_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2568 bp
Transcript Length:2340 bp
Protein Length:779 aa
Strand:+
Location:C06: 157350 : 159917
Gene CDSs(3): 1-1238 | 1332-1463 | 1599-2568 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF08488WAK 188 296 6.1e-44IPR013695Wall-associated kinase
HMMPfamPF00069Pkinase 439 727 1.3e-44IPR017442Serine/threonine-protein kinase-like domain
Gene3DG3DSA:1.10.510.10no description 517 722 1.4e-47Not foundNot found
Gene3DG3DSA:3.30.200.20no description 420 514 2.2e-25Not foundNot found
HMMSmartSM00219no description 439 711 1.2e-25IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 439 714 4.1e-37IPR002290Serine/threonine-protein kinase domain
HMMPantherPTHR23258SERINE-THREONINE PRO 305 743 9.4e-230Not foundNot found
HMMPantherPTHR23258:SF444WALL-ASSOCIATED PROT 305 743 9.4e-230Not foundNot found
superfamilySSF56112Protein kinase-like 424 731 1.2e-79IPR011009Protein kinase-like domain
ProfileScanPS50011PROTEIN_KINASE_DOM 439 727 40.103IPR000719Protein kinase, catalytic domain
PatternScanPS01187EGF_CA 324 355 NAIPR018097EGF-like calcium-binding, conserved site
PatternScanPS00108PROTEIN_KINASE_ST 562 574 NAIPR008271Serine/threonine-protein kinase, active site
Segsegseg 591 602 NANot foundNot found
Segsegseg 406 419 NANot foundNot found
Segsegseg 105 114 NANot foundNot found
Segsegseg 6 21 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005509 Molecular Function calcium ion binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q9C9L50.0WAKLH_ARATH Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3ECA41e-173Q3ECA4_ARATH Putative uncharacterized protein At1g79670.2 OS=Arabidopsis thaliana GN=At1g79670 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:1002830911e-50K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16110.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16120.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16130.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16150.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16160.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16260.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G17910.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G19390.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G69730.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G79670.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G79680.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT4G31100.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT4G31110.1
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol009838
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol009839
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol009840
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol010697
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol011559
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol018028
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol018030
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol018031
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol021492
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol021493
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol026855
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol029330
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol033707
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol038554
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol038555
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol040524
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol040525
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol045915
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra003598
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra011245
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra011247
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra015361
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra016370
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra024026
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra025736
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra026731
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra026732
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra030595
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra030596
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra031078
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra031079
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra035134
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra035135
ORTHOMCL72(75 genes,6 taxa):Vitis viniferaGSVIVT01008212001
ORTHOMCL72(75 genes,6 taxa):Vitis viniferaGSVIVT01008432001
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s03190.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s03210.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s03240.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07540.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07550.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07620.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07630.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07650.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18410.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18440.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18470.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18480.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18490.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18500.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0004s20370.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0018s14500.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0018s14510.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0075s00200.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0075s00210.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0112s00200.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0112s00220.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0112s00230.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0126s00200.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0126s00240.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0316s00220.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_1809s00200.1
ORTHOMCL72(75 genes,6 taxa):Carica papayaevm.TU.supercontig_106.105
Tandem Duplication
ClusterGene Num.Gene List
Cluster_2763Bol038553 Bol038554 Bol038555 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:142683..2462610 (-)A.thalianaChr1:28174378..29999045 (+)292
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:47325..759450 (+)B.rapaA09:2463329..2746972 (-)20
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G796802997997329982773Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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