Basic Information
Gene Model:Bol038520
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C06
Scaffold:Scaffold000020_P1
Sequence:
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Gene Structure
Nucleotide Length:2223 bp
Transcript Length:1002 bp
Protein Length:333 aa
Strand:-
Location:C06: 343892 : 346114
Gene CDSs(12): 1-105 | 196-297 | 443-502 | 605-667 | 770-894 | 1014-1176 | 1253-1312 | 1527-1585 | 1654-1735 | 1832-1895 | 1980-2024 | 2150-2223 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50206RHODANESE_3 232 327 13.303IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 64 181 18.348IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 210 327 1e-28IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 36 181 1.9e-32IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 223 309 1.1e-16IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 86 175 1.2e-15IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 67 182 5.4e-35IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 217 326 7.3e-26IPR001763Rhodanese-like
HMMPantherPTHR11364THIOSULFATE SULFERTA 70 331 7.6e-96Not foundNot found
PatternScanPS00380RHODANESE_1 88 99 NAIPR001307Thiosulphate sulfurtransferase, conserved site
HMMSmartSM00450no description 45 178 6.5e-16IPR001763Rhodanese-like
HMMSmartSM00450no description 222 324 0.008IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription
GO:0004792 Molecular Function thiosulfate sulfurtransferase activity
GO:0008272 Biological Process sulfate transport
Swiss-Prot
Best HitE_value Description
P253257e-50THTM_HUMAN 3-mercaptopyruvate sulfurtransferase OS=Homo sapiens GN=MPST PE=1 SV=3
TrEMBL
Best HitE_value Description
C7E6401e-163C7E640_BRANA Mercapto-pyruvate sulfurtransferase 1 OS=Brassica napus GN=ST1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15747401e-132K01011TST, MPST, sseA--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4598(11 genes,8 taxa):Arabidopsis thalianaAT1G79230.1
ORTHOMCL4598(11 genes,8 taxa):Brassica oleraceaBol021521
ORTHOMCL4598(11 genes,8 taxa):Brassica oleraceaBol038520
ORTHOMCL4598(11 genes,8 taxa):Brassica rapaBra003617
ORTHOMCL4598(11 genes,8 taxa):Brassica rapaBra035101
ORTHOMCL4598(11 genes,8 taxa):Vitis viniferaGSVIVT01036786001
ORTHOMCL4598(11 genes,8 taxa):Oryza sativaOs12t0608600-01
ORTHOMCL4598(11 genes,8 taxa):Oryza sativaOs12t0608600-02
ORTHOMCL4598(11 genes,8 taxa):Populus trichocarpaPOPTR_0005s09820.1
ORTHOMCL4598(11 genes,8 taxa):Sorghum bicolorSb08g020860.1
ORTHOMCL4598(11 genes,8 taxa):Carica papayaevm.TU.supercontig_34.16
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:142683..2462610 (-)A.thalianaChr1:28174378..29999045 (+)292
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:47325..759450 (+)B.rapaA09:2463329..2746972 (-)20
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G792302980069329803939Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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