Basic Information
Gene Model:Bol038441
Gene Family:Protein Kinase Gene Families
Chromosome:C05
Scaffold:Scaffold000021
Sequence:
 | 
Gene Structure
Nucleotide Length:1206 bp
Transcript Length:1206 bp
Protein Length:401 aa
Strand:+
Location:C05: 20973629 : 20974834
Gene CDSs(1): 1-1206 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 315 324 NANot foundNot found
Segsegseg 378 389 NANot foundNot found
Segsegseg 40 47 NANot foundNot found
Segsegseg 3 12 NANot foundNot found
HMMPfamPF00069Pkinase 20 334 2.9e-71IPR017442Serine/threonine-protein kinase-like domain
HMMPantherPTHR22985SERINE/THREONINE PRO 11 401 8.5e-210Not foundNot found
HMMPantherPTHR22985:SF89SERINE/THREONINE PRO 11 401 8.5e-210Not foundNot found
PatternScanPS00107PROTEIN_KINASE_ATP 26 51 NAIPR017441Protein kinase, ATP binding site
PatternScanPS00108PROTEIN_KINASE_ST 145 157 NAIPR008271Serine/threonine-protein kinase, active site
superfamilySSF56112Protein kinase-like 6 365 2.5e-71IPR011009Protein kinase-like domain
HMMSmartSM00220no description 20 334 4.7e-75IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 20 328 2.5e-06IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
Gene3DG3DSA:1.10.510.10no description 80 354 4e-52Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 20 334 42.774IPR000719Protein kinase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9LSF12e-74OXI1_ARATH Serine/threonine-protein kinase OXI1 OS=Arabidopsis thaliana GN=OXI1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LT380.0Q9LT38_ARATH Protein kinase-like protein OS=Arabidopsis thaliana GN=At3g20830 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
clu:CLUG_052901e-65K08286E2.7.11.-protein-serine/threonine kinase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7911(9 genes,7 taxa):Arabidopsis thalianaAT3G20830.1
ORTHOMCL7911(9 genes,7 taxa):Brassica oleraceaBol038441
ORTHOMCL7911(9 genes,7 taxa):Brassica rapaBra035740
ORTHOMCL7911(9 genes,7 taxa):Vitis viniferaGSVIVT01025309001
ORTHOMCL7911(9 genes,7 taxa):Oryza sativaOs09t0486700-01
ORTHOMCL7911(9 genes,7 taxa):Populus trichocarpaPOPTR_0001s05570.1
ORTHOMCL7911(9 genes,7 taxa):Populus trichocarpaPOPTR_0003s20480.1
ORTHOMCL7911(9 genes,7 taxa):Sorghum bicolorSb02g028250.1
ORTHOMCL7911(9 genes,7 taxa):Sorghum bicolorSb07g027930.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:19036067..23690127 (-)A.thalianaChr3:6669146..7716343 (+)157
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:18083575..22119341 (+)B.rapaA01:15255670..16460677 (+)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2083072849637286260Chr3Subgenome_III(LF)217
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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