Basic Information
Gene Model:Bol038440
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000021
Sequence:
 | 
Gene Structure
Nucleotide Length:2621 bp
Transcript Length:1623 bp
Protein Length:540 aa
Strand:-
Location:C05: 20885606 : 20888226
Gene CDSs(7): 1-758 | 939-1015 | 1278-1351 | 1447-1535 | 1782-1864 | 2006-2429 | 2504-2621 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 487 498 NANot foundNot found
Segsegseg 465 474 NANot foundNot found
Segsegseg 428 444 NANot foundNot found
Segsegseg 359 377 NANot foundNot found
Segsegseg 291 297 NANot foundNot found
HMMPfamPF00847AP2 261 308 2.6e-11IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 174 231 9.3e-10IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 256 318 2.7e-16IPR016177DNA-binding, integrase-type
superfamilySSF54171DNA-binding domain 174 241 5.6e-16IPR016177DNA-binding, integrase-type
HMMSmartSM00380no description 261 321 1.2e-26IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 175 244 2.6e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 263 318 6.5e-12IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 174 241 4.6e-08IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 256 315 16.805IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 175 238 16.924IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q5YGP80.0PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GW950.0B9GW95_POPTR AP2 domain-containing transcription factor OS=Populus trichocarpa GN=RAP23 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G511900.0K09285OVM, ANTAP2-like factor, ANT lineage
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3572(12 genes,5 taxa):Arabidopsis thalianaAT1G51190.1
ORTHOMCL3572(12 genes,5 taxa):Arabidopsis thalianaAT3G20840.1
ORTHOMCL3572(12 genes,5 taxa):Brassica oleraceaBol005816
ORTHOMCL3572(12 genes,5 taxa):Brassica oleraceaBol018822
ORTHOMCL3572(12 genes,5 taxa):Brassica oleraceaBol019537
ORTHOMCL3572(12 genes,5 taxa):Brassica oleraceaBol038440
ORTHOMCL3572(12 genes,5 taxa):Brassica rapaBra018899
ORTHOMCL3572(12 genes,5 taxa):Brassica rapaBra030451
ORTHOMCL3572(12 genes,5 taxa):Brassica rapaBra031234
ORTHOMCL3572(12 genes,5 taxa):Vitis viniferaGSVIVT01025307001
ORTHOMCL3572(12 genes,5 taxa):Populus trichocarpaPOPTR_0001s05580.1
ORTHOMCL3572(12 genes,5 taxa):Populus trichocarpaPOPTR_0003s20470.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:19036067..23690127 (-)A.thalianaChr3:6669146..7716343 (+)157
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:18083575..22119341 (+)B.rapaA01:15255670..16460677 (+)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2084073006757303693Chr3Subgenome_III(LF)217
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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