Basic Information
Gene Model:Bol038244
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000022
Sequence:
 | 
Gene Structure
Nucleotide Length:761 bp
Transcript Length:477 bp
Protein Length:158 aa
Strand:+
Location:C05: 6652017 : 6652777
Gene CDSs(2): 1-53 | 338-761 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 48 120 1.7e-18IPR003340Transcriptional factor B3
ProfileScanPS50863B3 25 118 13.592IPR003340Transcriptional factor B3
Segsegseg 139 153 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 42 120 5.4e-20Not foundNot found
PatternScanPS00284SERPIN 104 114 NAIPR000215Protease inhibitor I4, serpin
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0004867 Molecular Function serine-type endopeptidase inhibitor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FX777e-38Y1664_ARATH B3 domain-containing protein At1g16640 OS=Arabidopsis thaliana GN=At1g16640 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0SUV78e-37C0SUV7_ARATH Putative uncharacterized protein At1g16640 (Fragment) OS=Arabidopsis thaliana GN=At1g16640 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17387(3 genes,3 taxa):Arabidopsis thalianaAT1G16640.1
ORTHOMCL17387(3 genes,3 taxa):Brassica oleraceaBol038244
ORTHOMCL17387(3 genes,3 taxa):Brassica rapaBra026034
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:6238145..6991595 (-)A.thalianaChr1:29467437..29993724 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:5034477..7048613 (+)B.rapaA09:2431805..3214213 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1664056866035687715Chr1Subgenome_III(LF)212
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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