Basic Information
Gene Model:Bol038225
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C05
Scaffold:Scaffold000022
Sequence:
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Gene Structure
Nucleotide Length:2546 bp
Transcript Length:1140 bp
Protein Length:379 aa
Strand:-
Location:C05: 6486575 : 6489120
Gene CDSs(12): 1-102 | 202-269 | 354-417 | 503-584 | 656-714 | 911-970 | 1074-1236 | 1343-1467 | 1803-1865 | 1995-2054 | 2175-2354 | 2433-2546 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11364THIOSULFATE SULFERTA 33 378 2.1e-118Not foundNot found
PatternScanPS00683RHODANESE_2 356 366 NAIPR001307Thiosulphate sulfurtransferase, conserved site
PatternScanPS00380RHODANESE_1 117 128 NAIPR001307Thiosulphate sulfurtransferase, conserved site
Gene3DG3DSA:3.40.250.10no description 80 211 1.6e-43IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 252 374 7.6e-36IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 252 369 7e-27IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 84 204 2.9e-22IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 93 210 21.550IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 261 375 18.699IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 239 375 2.3e-37IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 74 214 6.9e-42IPR001763Rhodanese-like
HMMSmartSM00450no description 251 372 5.1e-17IPR001763Rhodanese-like
HMMSmartSM00450no description 83 207 3e-24IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription
GO:0004792 Molecular Function thiosulfate sulfurtransferase activity
GO:0008272 Biological Process sulfate transport
Swiss-Prot
Best HitE_value Description
P253259e-62THTM_HUMAN 3-mercaptopyruvate sulfurtransferase OS=Homo sapiens GN=MPST PE=1 SV=3
TrEMBL
Best HitE_value Description
B2D2I10.0B2D2I1_BRAOL Cytoplasmic thiosulfate:cyanide sulfur transferase OS=Brassica oleracea GN=B77C13.7 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002615431e-160K01011TST, MPST, sseA--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27115(2 genes,2 taxa):Brassica oleraceaBol038225
ORTHOMCL27115(2 genes,2 taxa):Brassica rapaBra026055
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:6238145..6991595 (-)A.thalianaChr1:29467437..29993724 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:5034477..7048613 (+)B.rapaA09:2431805..3214213 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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