Basic Information
Gene Model:Bol038221
Gene Family:Antiporter Super Family
Chromosome:C05
Scaffold:Scaffold000022
Sequence:
 | 
Gene Structure
Nucleotide Length:3470 bp
Transcript Length:2316 bp
Protein Length:771 aa
Strand:-
Location:C05: 6437918 : 6441387
Gene CDSs(4): 1-280 | 576-1504 | 2227-3174 | 3312-3470 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 246 260 NANot foundNot found
HMMPfamPF00999Na_H_Exchanger 27 400 4e-09IPR006153Cation/H+ exchanger
Gene Ontology
GO TermGO TypeDescription
GO:0006812 Biological Process cation transport
GO:0015299 Molecular Function solute:hydrogen antiporter activity
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
O229208e-48CHX13_ARATH K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1
TrEMBL
Best HitE_value Description
B2D2H80.0B2D2H8_BRAOL Antiporter family protein OS=Brassica oleracea GN=B77C13.2 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1450(17 genes,8 taxa):Arabidopsis thalianaAT1G16380.1
ORTHOMCL1450(17 genes,8 taxa):Arabidopsis thalianaAT1G79400.1
ORTHOMCL1450(17 genes,8 taxa):Brassica oleraceaBol029273
ORTHOMCL1450(17 genes,8 taxa):Brassica oleraceaBol038221
ORTHOMCL1450(17 genes,8 taxa):Brassica oleraceaBol038534
ORTHOMCL1450(17 genes,8 taxa):Brassica oleraceaBol040506
ORTHOMCL1450(17 genes,8 taxa):Brassica rapaBra008410
ORTHOMCL1450(17 genes,8 taxa):Brassica rapaBra016639
ORTHOMCL1450(17 genes,8 taxa):Brassica rapaBra026059
ORTHOMCL1450(17 genes,8 taxa):Brassica rapaBra035114
ORTHOMCL1450(17 genes,8 taxa):Vitis viniferaGSVIVT01037524001
ORTHOMCL1450(17 genes,8 taxa):Oryza sativaOs02t0833500-01
ORTHOMCL1450(17 genes,8 taxa):Populus trichocarpaPOPTR_0003s19350.1
ORTHOMCL1450(17 genes,8 taxa):Populus trichocarpaPOPTR_0003s19360.1
ORTHOMCL1450(17 genes,8 taxa):Sorghum bicolorSb04g030220.1
ORTHOMCL1450(17 genes,8 taxa):Carica papayaevm.TU.supercontig_30.88
ORTHOMCL1450(17 genes,8 taxa):Carica papayaevm.TU.supercontig_30.89
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:6238145..6991595 (-)A.thalianaChr1:29467437..29993724 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:5034477..7048613 (+)B.rapaA09:2431805..3214213 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1638055984535601367Chr1Subgenome_III(LF)212
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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