Basic Information
Gene Model:Bol038213
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000022
Sequence:
 | 
Gene Structure
Nucleotide Length:1557 bp
Transcript Length:1557 bp
Protein Length:518 aa
Strand:+
Location:C05: 6357131 : 6358687
Gene CDSs(1): 1-1557 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11600:SF40SUGAR TRANSPORTER PL 67 518 5.8e-259Not foundNot found
HMMPantherPTHR11600SUGAR TRANSPORTER 67 518 5.8e-259Not foundNot found
ProfileScanPS50850MFS 46 495 16.078Not foundNot found
superfamilySSF103473MFS general substrat 14 508 6.5e-42IPR016196Major facilitator superfamily, general substrate transporter
HMMPfamPF07690MFS_1 48 460 4.5e-13IPR011701Major facilitator superfamily MFS-1
Gene Ontology
GO TermGO TypeDescription
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q6A4L05e-37S22AD_MOUSE Solute carrier family 22 member 13 OS=Mus musculus GN=Slc22a13 PE=2 SV=2
TrEMBL
Best HitE_value Description
B2D2H70.0B2D2H7_BRAOL Transporter-related protein OS=Brassica oleracea GN=B77C13.1 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002658767e-62K08202SLC22A5, OCTN2MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 5
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1947(15 genes,3 taxa):Arabidopsis thalianaAT1G16370.1
ORTHOMCL1947(15 genes,3 taxa):Arabidopsis thalianaAT1G79410.1
ORTHOMCL1947(15 genes,3 taxa):Brassica oleraceaBol038213
ORTHOMCL1947(15 genes,3 taxa):Brassica oleraceaBol038215
ORTHOMCL1947(15 genes,3 taxa):Brassica oleraceaBol038218
ORTHOMCL1947(15 genes,3 taxa):Brassica oleraceaBol038219
ORTHOMCL1947(15 genes,3 taxa):Brassica oleraceaBol038220
ORTHOMCL1947(15 genes,3 taxa):Brassica oleraceaBol038535
ORTHOMCL1947(15 genes,3 taxa):Brassica oleraceaBol038536
ORTHOMCL1947(15 genes,3 taxa):Brassica oleraceaBol040507
ORTHOMCL1947(15 genes,3 taxa):Brassica rapaBra026061
ORTHOMCL1947(15 genes,3 taxa):Brassica rapaBra026062
ORTHOMCL1947(15 genes,3 taxa):Brassica rapaBra035115
ORTHOMCL1947(15 genes,3 taxa):Brassica rapaBra035116
ORTHOMCL1947(15 genes,3 taxa):Brassica rapaBra040629
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1793Bol038213 Bol038214 Bol038215 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:6238145..6991595 (-)A.thalianaChr1:29467437..29993724 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:5034477..7048613 (+)B.rapaA09:2431805..3214213 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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