Basic Information
Gene Model:Bol038203
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000022
Sequence:
 | 
Gene Structure
Nucleotide Length:1158 bp
Transcript Length:699 bp
Protein Length:232 aa
Strand:-
Location:C05: 6293390 : 6294547
Gene CDSs(5): 1-132 | 336-380 | 456-556 | 642-847 | 944-1158 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00397no description 131 198 7e-08IPR000727Target SNARE coiled-coil region
Gene3DG3DSA:1.20.5.110no description 136 200 4.5e-11Not foundNot found
HMMPfamPF05739SNARE 141 203 1.1e-14IPR000727Target SNARE coiled-coil region
HMMPantherPTHR12380:SF7SYNTAXIN 51 4 227 4e-167Not foundNot found
HMMPantherPTHR12380SYNTAXIN 4 227 4e-167Not foundNot found
PatternScanPS00914SYNTAXIN 142 181 NAIPR006012Syntaxin/epimorphin, conserved site
ProfileScanPS50192T_SNARE 136 198 14.621IPR000727Target SNARE coiled-coil region
Segsegseg 204 217 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9SA231e-117SYP51_ARATH Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9DHH71e-116B9DHH7_ARATH AT1G16240 protein OS=Arabidopsis thaliana GN=AT1G16240 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G162401e-117K08503SYP5syntaxin of plants SYP5
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1667(16 genes,8 taxa):Arabidopsis thalianaAT1G16240.1
ORTHOMCL1667(16 genes,8 taxa):Arabidopsis thalianaAT1G79590.1
ORTHOMCL1667(16 genes,8 taxa):Brassica oleraceaBol009834
ORTHOMCL1667(16 genes,8 taxa):Brassica oleraceaBol038203
ORTHOMCL1667(16 genes,8 taxa):Brassica oleraceaBol038548
ORTHOMCL1667(16 genes,8 taxa):Brassica rapaBra008425
ORTHOMCL1667(16 genes,8 taxa):Brassica rapaBra026074
ORTHOMCL1667(16 genes,8 taxa):Brassica rapaBra026727
ORTHOMCL1667(16 genes,8 taxa):Vitis viniferaGSVIVT01037735001
ORTHOMCL1667(16 genes,8 taxa):Oryza sativaOs08t0277900-01
ORTHOMCL1667(16 genes,8 taxa):Populus trichocarpaPOPTR_0006s03120.1
ORTHOMCL1667(16 genes,8 taxa):Populus trichocarpaPOPTR_0016s02990.1
ORTHOMCL1667(16 genes,8 taxa):Populus trichocarpaPOPTR_0016s02990.2
ORTHOMCL1667(16 genes,8 taxa):Populus trichocarpaPOPTR_0016s03000.1
ORTHOMCL1667(16 genes,8 taxa):Sorghum bicolorSb06g030000.2
ORTHOMCL1667(16 genes,8 taxa):Carica papayaevm.TU.supercontig_12.247
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:6238145..6991595 (-)A.thalianaChr1:29467437..29993724 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:5034477..7048613 (+)B.rapaA09:2431805..3214213 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1624055550075556841Chr1Subgenome_III(LF)212
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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