Basic Information
Gene Model:Bol038150
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000022
Sequence:
 | 
Gene Structure
Nucleotide Length:2423 bp
Transcript Length:1845 bp
Protein Length:614 aa
Strand:+
Location:C05: 5893952 : 5896374
Gene CDSs(5): 1-768 | 858-1112 | 1191-1334 | 1404-1751 | 2094-2423 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 79 88 NANot foundNot found
Segsegseg 570 581 NANot foundNot found
HMMPfamPF03219TLC 44 567 0IPR004667ADP/ATP carrier protein
HMMTigrTIGR00769AAA: ADP/ATP carrier 101 567 0IPR004667ADP/ATP carrier protein
Gene Ontology
GO TermGO TypeDescription
GO:0005471 Molecular Function ATP:ADP antiporter activity
GO:0005524 Molecular Function ATP binding
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
P929350.0TLC2_ARATH ADP,ATP carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=AATP2 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q0WW680.0Q0WW68_ARATH Adenine nucleotide translocase OS=Arabidopsis thaliana GN=At1g80300 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G155000.0K03301TC.AAAATP:ADP antiporter, AAA family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1093(19 genes,8 taxa):Arabidopsis thalianaAT1G15500.1
ORTHOMCL1093(19 genes,8 taxa):Arabidopsis thalianaAT1G80300.1
ORTHOMCL1093(19 genes,8 taxa):Brassica oleraceaBol001440
ORTHOMCL1093(19 genes,8 taxa):Brassica oleraceaBol021443
ORTHOMCL1093(19 genes,8 taxa):Brassica oleraceaBol029252
ORTHOMCL1093(19 genes,8 taxa):Brassica oleraceaBol038150
ORTHOMCL1093(19 genes,8 taxa):Brassica rapaBra003560
ORTHOMCL1093(19 genes,8 taxa):Brassica rapaBra016656
ORTHOMCL1093(19 genes,8 taxa):Brassica rapaBra026126
ORTHOMCL1093(19 genes,8 taxa):Brassica rapaBra035190
ORTHOMCL1093(19 genes,8 taxa):Vitis viniferaGSVIVT01017211001
ORTHOMCL1093(19 genes,8 taxa):Oryza sativaOs01t0647100-01
ORTHOMCL1093(19 genes,8 taxa):Oryza sativaOs01t0647100-02
ORTHOMCL1093(19 genes,8 taxa):Oryza sativaOs02t0208100-01
ORTHOMCL1093(19 genes,8 taxa):Populus trichocarpaPOPTR_0001s17520.1
ORTHOMCL1093(19 genes,8 taxa):Populus trichocarpaPOPTR_0003s05760.1
ORTHOMCL1093(19 genes,8 taxa):Sorghum bicolorSb03g029490.1
ORTHOMCL1093(19 genes,8 taxa):Sorghum bicolorSb04g007240.1
ORTHOMCL1093(19 genes,8 taxa):Carica papayaevm.TU.supercontig_246.12
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:5777796..6215709 (+)A.thalianaChr1:30092924..30400340 (+)23
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:5034477..7048613 (+)B.rapaA09:2431805..3214213 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1550053262905328874Chr1Subgenome_III(LF)212
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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