Basic Information
Gene Model:Bol037984
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000022
Sequence:
 | 
Gene Structure
Nucleotide Length:5423 bp
Transcript Length:1788 bp
Protein Length:595 aa
Strand:-
Location:C05: 4347899 : 4353321
Gene CDSs(9): 1-67 | 339-415 | 595-752 | 871-956 | 1159-1399 | 1577-1819 | 1995-2367 | 4352-4654 | 5184-5423 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR009462a69: Auxin Efflux C 1 595 7.4e-298IPR014024Auxin efflux carrier, subgroup
Segsegseg 346 357 NANot foundNot found
Segsegseg 258 276 NANot foundNot found
HMMPfamPF03547Mem_trans 9 590 1.7e-177IPR004776Auxin efflux carrier
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q9LU770.0PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q67YW00.0Q67YW0_ARATH Root gravitropism control protein (PIN2) OS=Arabidopsis thaliana GN=At5g57090 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G570900.0K13947
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL126(55 genes,8 taxa):Arabidopsis thalianaAT1G23080.1
ORTHOMCL126(55 genes,8 taxa):Arabidopsis thalianaAT1G70940.1
ORTHOMCL126(55 genes,8 taxa):Arabidopsis thalianaAT1G73590.1
ORTHOMCL126(55 genes,8 taxa):Arabidopsis thalianaAT2G01420.2
ORTHOMCL126(55 genes,8 taxa):Arabidopsis thalianaAT5G57090.1
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol012310
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol012605
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol014250
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol014822
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol016172
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol017432
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol026050
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol026255
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol034976
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol037984
ORTHOMCL126(55 genes,8 taxa):Brassica oleraceaBol039419
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra002763
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra003938
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra006834
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra008105
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra012358
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra015983
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra016173
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra016366
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra026669
ORTHOMCL126(55 genes,8 taxa):Brassica rapaBra035648
ORTHOMCL126(55 genes,8 taxa):Vitis viniferaGSVIVT01025748001
ORTHOMCL126(55 genes,8 taxa):Vitis viniferaGSVIVT01025749001
ORTHOMCL126(55 genes,8 taxa):Oryza sativaOs01t0643300-01
ORTHOMCL126(55 genes,8 taxa):Oryza sativaOs01t0643300-02
ORTHOMCL126(55 genes,8 taxa):Oryza sativaOs02t0743400-01
ORTHOMCL126(55 genes,8 taxa):Oryza sativaOs02t0743400-02
ORTHOMCL126(55 genes,8 taxa):Oryza sativaOs05t0576900-01
ORTHOMCL126(55 genes,8 taxa):Oryza sativaOs06t0232300-01
ORTHOMCL126(55 genes,8 taxa):Oryza sativaOs06t0660200-01
ORTHOMCL126(55 genes,8 taxa):Oryza sativaOs11t0137000-01
ORTHOMCL126(55 genes,8 taxa):Populus trichocarpaPOPTR_0006s03540.1
ORTHOMCL126(55 genes,8 taxa):Populus trichocarpaPOPTR_0008s12830.1
ORTHOMCL126(55 genes,8 taxa):Populus trichocarpaPOPTR_0010s12320.1
ORTHOMCL126(55 genes,8 taxa):Populus trichocarpaPOPTR_0012s04470.1
ORTHOMCL126(55 genes,8 taxa):Populus trichocarpaPOPTR_0012s04470.2
ORTHOMCL126(55 genes,8 taxa):Populus trichocarpaPOPTR_0012s04470.3
ORTHOMCL126(55 genes,8 taxa):Populus trichocarpaPOPTR_0015s04570.1
ORTHOMCL126(55 genes,8 taxa):Populus trichocarpaPOPTR_0016s03450.1
ORTHOMCL126(55 genes,8 taxa):Populus trichocarpaPOPTR_0018s13610.1
ORTHOMCL126(55 genes,8 taxa):Sorghum bicolorSb03g029320.1
ORTHOMCL126(55 genes,8 taxa):Sorghum bicolorSb04g028170.1
ORTHOMCL126(55 genes,8 taxa):Sorghum bicolorSb05g002150.1
ORTHOMCL126(55 genes,8 taxa):Sorghum bicolorSb10g004430.1
ORTHOMCL126(55 genes,8 taxa):Sorghum bicolorSb10g008290.1
ORTHOMCL126(55 genes,8 taxa):Sorghum bicolorSb10g026300.1
ORTHOMCL126(55 genes,8 taxa):Carica papayaevm.TU.contig_35483.1
ORTHOMCL126(55 genes,8 taxa):Carica papayaevm.TU.supercontig_115.55
ORTHOMCL126(55 genes,8 taxa):Carica papayaevm.TU.supercontig_65.137
ORTHOMCL126(55 genes,8 taxa):Carica papayaevm.TU.supercontig_92.84
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:4075166..5091451 (-)A.thalianaChr5:22865110..23198524 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:4075166..5293617 (+)B.rapaA10:9687460..10301149 (+)36
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G570902310069323104735Chr5Subgenome_III(LF)30
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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