Basic Information
Gene Model:Bol037978
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000023_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:4191 bp
Transcript Length:420 bp
Protein Length:139 aa
Strand:+
Location:C04: 34712153 : 34716343
Gene CDSs(4): 1-147 | 320-382 | 537-657 | 4103-4191 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00957Synaptobrevin 46 134 1.3e-41IPR001388Synaptobrevin
Segsegseg 112 130 NANot foundNot found
HMMPantherPTHR21136:SF8VAMP-7 33 138 1.1e-60Not foundNot found
HMMPantherPTHR21136SNARE PROTEINS 33 138 1.1e-60Not foundNot found
ProfileScanPS50892V_SNARE 49 109 19.675IPR001388Synaptobrevin
Gene3DG3DSA:1.20.5.110no description 34 113 1.8e-26Not foundNot found
PatternScanPS00417SYNAPTOBREVIN 67 86 NAIPR001388Synaptobrevin
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9MAS52e-46VA726_ARATH Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2
TrEMBL
Best HitE_value Description
A9NNA83e-48A9NNA8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G047603e-46K08511ATVAMP72vesicle-associated membrane protein 72
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..35997741 (+)B.rapaA04:11822450..12577344 (+)121
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G326701385787713859774Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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