Basic Information
Gene Model:Bol037871
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000023_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2622 bp
Transcript Length:1698 bp
Protein Length:565 aa
Strand:+
Location:C04: 35698119 : 35700740
Gene CDSs(3): 1-689 | 919-1339 | 2035-2622 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 291 308 NANot foundNot found
Segsegseg 142 154 NANot foundNot found
Segsegseg 122 141 NANot foundNot found
HMMPantherPTHR21576:SF1UNCHARACTERIZED NODU 1 563 0Not foundNot found
HMMPantherPTHR21576UNCHARACTERIZED NODU 1 563 0Not foundNot found
superfamilySSF103473MFS general substrat 153 254 1.5e-05IPR016196Major facilitator superfamily, general substrate transporter
superfamilySSF103473MFS general substrat 259 553 8.1e-19IPR016196Major facilitator superfamily, general substrate transporter
HMMPfamPF06813Nodulin-like 7 305 1.7e-48IPR010658Nodulin-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6CGU81e-07MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica GN=MCH1 PE=3 SV=1
TrEMBL
Best HitE_value Description
O807840.0O80784_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At2g34350 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL971(20 genes,7 taxa):Arabidopsis thalianaAT1G18940.1
ORTHOMCL971(20 genes,7 taxa):Arabidopsis thalianaAT1G74780.1
ORTHOMCL971(20 genes,7 taxa):Arabidopsis thalianaAT2G34350.1
ORTHOMCL971(20 genes,7 taxa):Arabidopsis thalianaAT2G34355.1
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol027340
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol030723
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol037871
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol037872
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol039932
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra003786
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra005435
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra021904
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra021905
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra025702
ORTHOMCL971(20 genes,7 taxa):Vitis viniferaGSVIVT01008083001
ORTHOMCL971(20 genes,7 taxa):Oryza sativaOs12t0639100-01
ORTHOMCL971(20 genes,7 taxa):Oryza sativaOs12t0639100-02
ORTHOMCL971(20 genes,7 taxa):Oryza sativaOs12t0639100-03
ORTHOMCL971(20 genes,7 taxa):Populus trichocarpaPOPTR_0015s07820.1
ORTHOMCL971(20 genes,7 taxa):Carica papayaevm.TU.supercontig_1718.2
Tandem Duplication
ClusterGene Num.Gene List
Cluster_12722Bol037871 Bol037872 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:35483488..35924667 (+)B.rapaA09:33625351..34784802 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G343551449632814498389Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo