Basic Information
Gene Model:Bol037841
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000023_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:912 bp
Transcript Length:825 bp
Protein Length:274 aa
Strand:+
Location:C04: 35894417 : 35895328
Gene CDSs(2): 1-153 | 241-912 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 150 227 1.2e-10IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 166 215 3.4e-08IPR001092Basic helix-loop-helix dimerisation region bHLH
ProfileScanPS50888HLH 157 210 9.576IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 167 177 NANot foundNot found
Segsegseg 36 53 NANot foundNot found
HMMPfamPF00010HLH 163 210 0.0024IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q84RD01e-103BH053_ARATH Transcription factor bHLH53 OS=Arabidopsis thaliana GN=BHLH53 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8S3E59e-88Q8S3E5_ARATH Putative bHLH transcription factor OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G013103e-08K10863APTXaprataxin
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13998(5 genes,3 taxa):Arabidopsis thalianaAT2G34820.1
ORTHOMCL13998(5 genes,3 taxa):Brassica oleraceaBol036944
ORTHOMCL13998(5 genes,3 taxa):Brassica oleraceaBol037841
ORTHOMCL13998(5 genes,3 taxa):Brassica rapaBra021933
ORTHOMCL13998(5 genes,3 taxa):Brassica rapaBra022993
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:35483488..35924667 (+)B.rapaA09:33625351..34784802 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G348201468962414690879Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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