Basic Information
Gene Model:Bol037786
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C04
Scaffold:Scaffold000023_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1454 bp
Transcript Length:1002 bp
Protein Length:333 aa
Strand:-
Location:C04: 36299987 : 36301440
Gene CDSs(6): 1-225 | 350-472 | 566-659 | 746-828 | 909-998 | 1068-1454 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00383TYR_PHOSPHATASE_1 158 168 NAIPR016130Protein-tyrosine phosphatase, active site
HMMSmartSM00195no description 72 213 8.8e-05IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPfamPF00782DSPc 141 213 5.2e-17IPR000340Dual specificity phosphatase, catalytic domain
ProfileScanPS50056TYR_PHOSPHATASE_2 137 205 13.887IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 72 197 17.785IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPantherPTHR10159DUAL SPECIFICITY PRO 63 319 3.7e-176Not foundNot found
HMMPantherPTHR10159:SF5PTEN-RELATED PHOSPHA 63 319 3.7e-176Not foundNot found
Gene3DG3DSA:3.90.190.10no description 67 222 2.1e-30Not foundNot found
superfamilySSF52799(Phosphotyrosine pro 67 213 3.6e-36Not foundNot found
Segsegseg 240 254 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
P0C0893e-26PTPM1_RAT Protein-tyrosine phosphatase mitochondrial 1 OS=Rattus norvegicus GN=Ptpmt1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9ZQP11e-166Q9ZQP1_ARATH Expressed protein OS=Arabidopsis thaliana GN=dsp8 PE=2 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_4099551e-75K14165K14165--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2465(14 genes,7 taxa):Arabidopsis thalianaAT2G35680.1
ORTHOMCL2465(14 genes,7 taxa):Brassica oleraceaBol037786
ORTHOMCL2465(14 genes,7 taxa):Brassica oleraceaBol039787
ORTHOMCL2465(14 genes,7 taxa):Brassica rapaBra017303
ORTHOMCL2465(14 genes,7 taxa):Vitis viniferaGSVIVT01006270001
ORTHOMCL2465(14 genes,7 taxa):Oryza sativaOs10t0561900-01
ORTHOMCL2465(14 genes,7 taxa):Oryza sativaOs10t0561900-02
ORTHOMCL2465(14 genes,7 taxa):Oryza sativaOs10t0561900-03
ORTHOMCL2465(14 genes,7 taxa):Oryza sativaOs10t0561900-04
ORTHOMCL2465(14 genes,7 taxa):Populus trichocarpaPOPTR_0001s15460.1
ORTHOMCL2465(14 genes,7 taxa):Populus trichocarpaPOPTR_0002s13750.1
ORTHOMCL2465(14 genes,7 taxa):Populus trichocarpaPOPTR_0003s07780.1
ORTHOMCL2465(14 genes,7 taxa):Populus trichocarpaPOPTR_0014s04500.1
ORTHOMCL2465(14 genes,7 taxa):Carica papayaevm.TU.supercontig_89.55
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34712153..37938243 (+)B.rapaA05:20289850..23204782 (-)186
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G356801499671314999085Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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