Basic Information
Gene Model:Bol037779
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000023_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2468 bp
Transcript Length:1740 bp
Protein Length:579 aa
Strand:-
Location:C04: 36349976 : 36352443
Gene CDSs(3): 1-537 | 1014-1739 | 1992-2468 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00217SUGAR_TRANSPORT_2 127 152 NAIPR005829Sugar transporter, conserved site
PatternScanPS00216SUGAR_TRANSPORT_1 331 347 NAIPR005829Sugar transporter, conserved site
HMMTigrTIGR00879SP: MFS transporter, 1 554 6e-96IPR003663Sugar/inositol transporter
HMMPfamPF00083Sugar_tr 28 558 2.3e-127IPR005828General substrate transporter
ProfileScanPS50850MFS 28 547 56.274Not foundNot found
HMMPantherPTHR11600SUGAR TRANSPORTER 8 341 1e-170Not foundNot found
HMMPantherPTHR11600:SF85SUGAR TRANSPORTER 8 341 1e-170Not foundNot found
Coilcoilcoiled-coil 231 252 NANot foundNot found
superfamilySSF103473MFS general substrat 1 561 1.2e-73IPR016196Major facilitator superfamily, general substrate transporter
Segsegseg 75 86 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q9ZQP60.0INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9IH500.0B9IH50_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_254734 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G357400.0K08150SLC2A13, ITRMFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL529(26 genes,8 taxa):Arabidopsis thalianaAT1G30220.1
ORTHOMCL529(26 genes,8 taxa):Arabidopsis thalianaAT2G35740.1
ORTHOMCL529(26 genes,8 taxa):Arabidopsis thalianaAT4G16480.1
ORTHOMCL529(26 genes,8 taxa):Brassica oleraceaBol016127
ORTHOMCL529(26 genes,8 taxa):Brassica oleraceaBol020228
ORTHOMCL529(26 genes,8 taxa):Brassica oleraceaBol037183
ORTHOMCL529(26 genes,8 taxa):Brassica oleraceaBol037779
ORTHOMCL529(26 genes,8 taxa):Brassica rapaBra010788
ORTHOMCL529(26 genes,8 taxa):Brassica rapaBra012714
ORTHOMCL529(26 genes,8 taxa):Brassica rapaBra017297
ORTHOMCL529(26 genes,8 taxa):Brassica rapaBra038469
ORTHOMCL529(26 genes,8 taxa):Vitis viniferaGSVIVT01006723001
ORTHOMCL529(26 genes,8 taxa):Vitis viniferaGSVIVT01021530001
ORTHOMCL529(26 genes,8 taxa):Oryza sativaOs04t0511400-01
ORTHOMCL529(26 genes,8 taxa):Oryza sativaOs04t0511400-02
ORTHOMCL529(26 genes,8 taxa):Oryza sativaOs07t0151200-00
ORTHOMCL529(26 genes,8 taxa):Populus trichocarpaPOPTR_0004s14070.1
ORTHOMCL529(26 genes,8 taxa):Populus trichocarpaPOPTR_0006s01630.1
ORTHOMCL529(26 genes,8 taxa):Populus trichocarpaPOPTR_0006s01640.1
ORTHOMCL529(26 genes,8 taxa):Populus trichocarpaPOPTR_0016s01190.1
ORTHOMCL529(26 genes,8 taxa):Sorghum bicolorSb02g003050.1
ORTHOMCL529(26 genes,8 taxa):Sorghum bicolorSb02g010540.1
ORTHOMCL529(26 genes,8 taxa):Sorghum bicolorSb06g022300.1
ORTHOMCL529(26 genes,8 taxa):Carica papayaevm.TU.contig_32097.1
ORTHOMCL529(26 genes,8 taxa):Carica papayaevm.TU.supercontig_27.265
ORTHOMCL529(26 genes,8 taxa):Carica papayaevm.TU.supercontig_75.91
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34712153..37938243 (+)B.rapaA05:20289850..23204782 (-)186
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G357401502448915026414Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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