Basic Information
Gene Model:Bol037747
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000023_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1715 bp
Transcript Length:723 bp
Protein Length:240 aa
Strand:-
Location:C04: 36622099 : 36623813
Gene CDSs(2): 1-502 | 1495-1715 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 37 143 14.071IPR003340Transcriptional factor B3
HMMPfamPF02362B3 36 145 3.5e-35IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 24 155 3.1e-39Not foundNot found
Segsegseg 217 228 NANot foundNot found
Segsegseg 144 151 NANot foundNot found
Segsegseg 18 26 NANot foundNot found
Segsegseg 132 143 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8GYJ21e-110Y2608_ARATH B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SX037e-57B9SX03_RICCO Transcription factor, putative OS=Ricinus communis GN=RCOM_1258760 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G132601e-37K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1310(18 genes,8 taxa):Arabidopsis thalianaAT2G36080.1
ORTHOMCL1310(18 genes,8 taxa):Arabidopsis thalianaAT5G06250.2
ORTHOMCL1310(18 genes,8 taxa):Brassica oleraceaBol010920
ORTHOMCL1310(18 genes,8 taxa):Brassica oleraceaBol011702
ORTHOMCL1310(18 genes,8 taxa):Brassica oleraceaBol037747
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra001411
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra005301
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra005886
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra017262
ORTHOMCL1310(18 genes,8 taxa):Vitis viniferaGSVIVT01033902001
ORTHOMCL1310(18 genes,8 taxa):Oryza sativaOs11t0156000-01
ORTHOMCL1310(18 genes,8 taxa):Oryza sativaOs11t0156000-02
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s22460.1
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s22460.2
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s22460.3
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0016s07540.1
ORTHOMCL1310(18 genes,8 taxa):Sorghum bicolorSb05g003450.1
ORTHOMCL1310(18 genes,8 taxa):Carica papayaevm.TU.contig_29173.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:36396141..37787728 (+)A.thalianaChr3:19407023..20112944 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:36466488..37499835 (+)B.rapaA09:10284578..11183378 (+)26
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G360801514825915151575Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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