Basic Information
Gene Model:Bol037715
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000023_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:540 bp
Transcript Length:540 bp
Protein Length:179 aa
Strand:-
Location:C04: 36890310 : 36890849
Gene CDSs(1): 1-540 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.730.10no description 13 75 5.7e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 14 78 3.9e-32IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 91 106 NANot foundNot found
Segsegseg 51 61 NANot foundNot found
HMMPfamPF00847AP2 13 65 1.5e-18IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 14 72 21.167IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 13 75 2.6e-21IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SJR04e-71ERF24_ARATH Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1
TrEMBL
Best HitE_value Description
A5B1169e-48A5B116_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035581 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G254902e-34K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11500(7 genes,6 taxa):Arabidopsis thalianaAT2G36450.1
ORTHOMCL11500(7 genes,6 taxa):Brassica oleraceaBol037715
ORTHOMCL11500(7 genes,6 taxa):Brassica rapaBra017235
ORTHOMCL11500(7 genes,6 taxa):Vitis viniferaGSVIVT01033793001
ORTHOMCL11500(7 genes,6 taxa):Populus trichocarpaPOPTR_0006s02180.1
ORTHOMCL11500(7 genes,6 taxa):Populus trichocarpaPOPTR_0016s02010.1
ORTHOMCL11500(7 genes,6 taxa):Carica papayaevm.TU.supercontig_5.68
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:36396141..37787728 (+)A.thalianaChr3:19407023..20112944 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:36466488..37499835 (+)B.rapaA09:10284578..11183378 (+)26
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G364501529430315294857Chr2Subgenome_I375
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo