Basic Information
Gene Model:Bol037509
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000024
Sequence:
 | 
Gene Structure
Nucleotide Length:3651 bp
Transcript Length:1647 bp
Protein Length:548 aa
Strand:-
Location:Scaffold000024: 1052543 : 1056193
Gene CDSs(11): 1-96 | 213-432 | 583-654 | 734-855 | 937-1058 | 1478-1655 | 2470-2727 | 2816-2966 | 3063-3167 | 3248-3369 | 3451-3651 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52402Adenine nucleotide a 3 132 7e-06Not foundNot found
Segsegseg 287 295 NANot foundNot found
Segsegseg 456 506 NANot foundNot found
Segsegseg 243 256 NANot foundNot found
Coilcoilcoiled-coil 237 264 NANot foundNot found
Coilcoilcoiled-coil 208 233 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q8GZ841e-103PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q3EAG21e-102Q3EAG2_ARATH Putative uncharacterized protein At3g61390.1 OS=Arabidopsis thaliana GN=At3g61390 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27054(2 genes,2 taxa):Brassica oleraceaBol037509
ORTHOMCL27054(2 genes,2 taxa):Brassica rapaBra014439
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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