Basic Information
Gene Model:Bol037390
Gene Family:Protein Kinase Gene Families
Chromosome:C08
Scaffold:Scaffold000025
Sequence:
 | 
Gene Structure
Nucleotide Length:7995 bp
Transcript Length:3567 bp
Protein Length:1188 aa
Strand:-
Location:C08: 24303890 : 24311884
Gene CDSs(16): 1-175 | 663-784 | 1018-1139 | 1225-1329 | 1464-1609 | 1695-1843 | 2147-2293 | 2573-3100 | 3168-3887 | 4511-4819 | 4885-4961 | 5079-5190 | 5279-5395 | 5490-5784 | 7010-7206 | 7750-7995 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 455 708 29.192IPR000719Protein kinase, catalytic domain
PatternScanPS00107PROTEIN_KINASE_ATP 461 482 NAIPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.10no description 527 733 2e-32Not foundNot found
Gene3DG3DSA:3.30.200.20no description 436 527 2e-14Not foundNot found
Segsegseg 1076 1089 NANot foundNot found
Segsegseg 1054 1063 NANot foundNot found
Segsegseg 1033 1048 NANot foundNot found
Segsegseg 1008 1021 NANot foundNot found
Segsegseg 964 983 NANot foundNot found
Segsegseg 913 927 NANot foundNot found
Segsegseg 830 838 NANot foundNot found
Segsegseg 331 348 NANot foundNot found
Segsegseg 239 252 NANot foundNot found
Coilcoilcoiled-coil 964 985 NANot foundNot found
Coilcoilcoiled-coil 937 958 NANot foundNot found
Coilcoilcoiled-coil 877 926 NANot foundNot found
Coilcoilcoiled-coil 842 870 NANot foundNot found
Coilcoilcoiled-coil 818 839 NANot foundNot found
Coilcoilcoiled-coil 756 798 NANot foundNot found
Coilcoilcoiled-coil 400 428 NANot foundNot found
Coilcoilcoiled-coil 330 358 NANot foundNot found
HMMSmartSM00219no description 455 705 1.3e-12IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 455 709 1.1e-12IPR002290Serine/threonine-protein kinase domain
HMMPantherPTHR23258SERINE-THREONINE PRO 403 741 4.3e-206Not foundNot found
HMMPantherPTHR23258:SF448RECEPTOR PROTEIN KIN 403 741 4.3e-206Not foundNot found
HMMPfamPF07714Pkinase_Tyr 460 601 6.2e-19IPR001245Tyrosine-protein kinase, catalytic domain
superfamilySSF56112Protein kinase-like 444 732 1.3e-53IPR011009Protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q94A510.0PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9I4761e-179B9I476_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_773342 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43375935e-35K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL726(23 genes,8 taxa):Arabidopsis thalianaAT2G45910.1
ORTHOMCL726(23 genes,8 taxa):Arabidopsis thalianaAT3G49060.1
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol003480
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol021760
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol030222
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol037390
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra004947
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra018013
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra019576
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra039305
ORTHOMCL726(23 genes,8 taxa):Vitis viniferaGSVIVT01026936001
ORTHOMCL726(23 genes,8 taxa):Vitis viniferaGSVIVT01028909001
ORTHOMCL726(23 genes,8 taxa):Oryza sativaOs02t0665500-01
ORTHOMCL726(23 genes,8 taxa):Oryza sativaOs10t0548700-01
ORTHOMCL726(23 genes,8 taxa):Oryza sativaOs10t0548700-02
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0002s16150.1
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0002s16160.1
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0012s13020.1
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0014s08060.1
ORTHOMCL726(23 genes,8 taxa):Sorghum bicolorSb04g032450.1
ORTHOMCL726(23 genes,8 taxa):Carica papayaevm.TU.supercontig_107.71
ORTHOMCL726(23 genes,8 taxa):Carica papayaevm.TU.supercontig_11.7
ORTHOMCL726(23 genes,8 taxa):Carica papayaevm.TU.supercontig_11.9
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:23621621..24848929 (+)A.thalianaChr3:17897799..18456125 (+)83
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:23621621..24827599 (+)B.rapaA06:23247913..24137203 (-)81
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
MAT3G490601818721418191935Chr3Subgenome_III(LF)77
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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