Basic Information
Gene Model:Bol037350
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000025
Sequence:
 | 
Gene Structure
Nucleotide Length:1251 bp
Transcript Length:996 bp
Protein Length:331 aa
Strand:+
Location:C08: 24679587 : 24680837
Gene CDSs(3): 1-663 | 744-1039 | 1215-1251 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03151TPT 165 313 3.4e-40IPR004853Protein of unknown function DUF250
superfamilySSF103481Multidrug resistance 51 154 0.0021Not foundNot found
Segsegseg 88 97 NANot foundNot found
Segsegseg 13 25 NANot foundNot found
Segsegseg 45 56 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q8RY831e-120PUP13_ARATH Probable purine permease 13 OS=Arabidopsis thaliana GN=PUP13 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9MVC27e-84B9MVC2_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_591810 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14211(5 genes,3 taxa):Arabidopsis thalianaAT4G08700.1
ORTHOMCL14211(5 genes,3 taxa):Arabidopsis thalianaAT5G41160.1
ORTHOMCL14211(5 genes,3 taxa):Brassica oleraceaBol005509
ORTHOMCL14211(5 genes,3 taxa):Brassica oleraceaBol037350
ORTHOMCL14211(5 genes,3 taxa):Brassica rapaBra037874
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:23621621..24848929 (+)A.thalianaChr3:17897799..18456125 (+)83
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:23621621..24827599 (+)B.rapaA06:23247913..24137203 (-)81
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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