Basic Information
Gene Model:Bol037301
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C08
Scaffold:Scaffold000025
Sequence:
 | 
Gene Structure
Nucleotide Length:851 bp
Transcript Length:687 bp
Protein Length:228 aa
Strand:-
Location:C08: 25772558 : 25773408
Gene CDSs(3): 1-244 | 335-455 | 530-851 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.90.190.10no description 28 177 9.9e-49Not foundNot found
HMMPfamPF00782DSPc 30 168 2e-42IPR000340Dual specificity phosphatase, catalytic domain
ProfileScanPS50056TYR_PHOSPHATASE_2 73 150 12.363IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 30 170 37.382IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPantherPTHR10159DUAL SPECIFICITY PRO 27 174 1.2e-107Not foundNot found
HMMPantherPTHR10159:SF33SKRP-RELATED DUAL SP 27 174 1.2e-107Not foundNot found
HMMSmartSM00195no description 30 168 4.5e-43IPR020422Dual specificity phosphatase, subgroup, catalytic domain
superfamilySSF52799(Phosphotyrosine pro 28 169 1.4e-47Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q8TE773e-26SSH3_HUMAN Protein phosphatase Slingshot homolog 3 OS=Homo sapiens GN=SSH3 PE=1 SV=2
TrEMBL
Best HitE_value Description
B3H4F52e-85B3H4F5_ARATH Uncharacterized protein At3g23610.2 OS=Arabidopsis thaliana GN=At3g23610 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G236103e-86K05766SSHslingshot
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9875(8 genes,8 taxa):Arabidopsis thalianaAT3G23610.2
ORTHOMCL9875(8 genes,8 taxa):Brassica oleraceaBol037301
ORTHOMCL9875(8 genes,8 taxa):Brassica rapaBra014966
ORTHOMCL9875(8 genes,8 taxa):Vitis viniferaGSVIVT01017893001
ORTHOMCL9875(8 genes,8 taxa):Oryza sativaOs01t0390900-01
ORTHOMCL9875(8 genes,8 taxa):Populus trichocarpaPOPTR_0010s03980.1
ORTHOMCL9875(8 genes,8 taxa):Sorghum bicolorSb01g011930.1
ORTHOMCL9875(8 genes,8 taxa):Carica papayaevm.TU.supercontig_16.20
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:24816514..26473498 (-)A.thalianaChr3:8242302..8674881 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:24836083..26584307 (+)B.rapaA07:7104809..7926793 (-)60
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2361084781228479857Chr3Subgenome_III(LF)48
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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