Basic Information
Gene Model:Bol037257
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000025
Sequence:
 | 
Gene Structure
Nucleotide Length:1409 bp
Transcript Length:987 bp
Protein Length:328 aa
Strand:+
Location:C08: 26345827 : 26347235
Gene CDSs(5): 1-258 | 348-510 | 594-659 | 783-1223 | 1351-1409 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 299 312 NANot foundNot found
Segsegseg 7 14 NANot foundNot found
HMMPfamPF00010HLH 171 222 8.4e-07IPR001092Basic helix-loop-helix dimerisation region bHLH
ProfileScanPS50888HLH 166 222 10.458IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 179 248 0.00029IPR011598Helix-loop-helix DNA-binding
Coilcoilcoiled-coil 211 267 NANot foundNot found
HMMSmartSM00353no description 176 227 1.7e-06IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 160 239 3.1e-11IPR011598Helix-loop-helix DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9LTC71e-117BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HUA18e-54B9HUA1_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_658381 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0282304e-06K13422MYC2transcription factor MYC2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18484(3 genes,3 taxa):Arabidopsis thalianaAT3G23210.1
ORTHOMCL18484(3 genes,3 taxa):Brassica oleraceaBol037257
ORTHOMCL18484(3 genes,3 taxa):Brassica rapaBra014923
Tandem Duplication
ClusterGene Num.Gene List
Cluster_18222Bol037256 Bol037257 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:24816514..26473498 (-)A.thalianaChr3:8242302..8674881 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:26338160..27362354 (+)B.rapaA09:18799880..19329668 (+)36
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2321082830908285081Chr3Subgenome_III(LF)48
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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