Basic Information
Gene Model:Bol037208
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000026
Sequence:
 | 
Gene Structure
Nucleotide Length:3134 bp
Transcript Length:1806 bp
Protein Length:601 aa
Strand:+
Location:C07: 38521766 : 38524899
Gene CDSs(6): 1-69 | 171-1154 | 1749-1825 | 1911-2297 | 2382-2534 | 2999-3134 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPIRPIRSF036392Response regulator, 4 598 3e-227IPR017053Response regulator, plant B-type
HMMPfamPF00072Response_reg 22 133 1e-24IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00249Myb_DNA-binding 204 254 1.4e-12IPR014778Myb, DNA-binding
superfamilySSF46689Homeodomain-like 198 261 3.4e-20IPR009057Homeodomain-like
superfamilySSF52172CheY-like 17 144 2.4e-34IPR011006CheY-like
HMMPantherPTHR23283SENSOR HISTIDINE KIN 18 140 8.8e-16Not foundNot found
HMMPantherPTHR23283:SF40TWO-COMPONENT SENSOR 18 140 8.8e-16Not foundNot found
ProfileScanPS51294HTH_MYB 199 258 12.263IPR017930Myb-type HTH DNA-binding domain
ProfileScanPS50110RESPONSE_REGULATORY 21 136 30.352IPR001789Signal transduction response regulator, receiver region
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 202 257 3.3e-30IPR006447Myb-like DNA-binding region, SHAQKYF class
Segsegseg 490 506 NANot foundNot found
Segsegseg 463 470 NANot foundNot found
Segsegseg 387 401 NANot foundNot found
Segsegseg 153 178 NANot foundNot found
Segsegseg 296 313 NANot foundNot found
HMMSmartSM00448no description 20 132 2.1e-28IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:1.10.10.60no description 198 261 1.6e-23IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 20 172 1.3e-28Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9ZWJ90.0ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q680A80.0Q680A8_ARATH ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G161100.0K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3097(13 genes,6 taxa):Arabidopsis thalianaAT3G16857.2
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol020274
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol022968
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol036899
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol037208
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra001643
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra012743
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra022183
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra033527
ORTHOMCL3097(13 genes,6 taxa):Vitis viniferaGSVIVT01035051001
ORTHOMCL3097(13 genes,6 taxa):Populus trichocarpaPOPTR_0008s22990.1
ORTHOMCL3097(13 genes,6 taxa):Populus trichocarpaPOPTR_0010s00320.1
ORTHOMCL3097(13 genes,6 taxa):Carica papayaevm.TU.supercontig_9.100
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:38096417..39492639 (+)A.thalianaChr4:8672070..10165562 (+)146
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:38145839..38582460 (+)B.rapaA08:17645724..18077813 (-)20
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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