Basic Information
Gene Model:Bol037161
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000026
Sequence:
 | 
Gene Structure
Nucleotide Length:546 bp
Transcript Length:546 bp
Protein Length:181 aa
Strand:-
Location:C07: 38795305 : 38795850
Gene CDSs(1): 1-546 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00847AP2 38 89 7.7e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 39 102 5.5e-39IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 38 99 2e-22IPR016177DNA-binding, integrase-type
Gene3DG3DSA:3.30.730.10no description 38 99 1.9e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 129 142 NANot foundNot found
Segsegseg 115 121 NANot foundNot found
ProfileScanPS51032AP2_ERF 39 96 22.616IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SUK89e-73ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q5MAR79e-56Q5MAR7_BRANA Transcription factor DREBIII-1 OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_07993201e-34K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27016(2 genes,2 taxa):Brassica oleraceaBol037161
ORTHOMCL27016(2 genes,2 taxa):Brassica rapaBra012693
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:38096417..39492639 (+)A.thalianaChr4:8672070..10165562 (+)146
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:37782784..39951939 (+)B.rapaA03:8747566..10312735 (-)194
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G1675094209179421759Chr4Subgenome_I97
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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