Basic Information
Gene Model:Bol037110
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000026
Sequence:
 | 
Gene Structure
Nucleotide Length:1337 bp
Transcript Length:834 bp
Protein Length:277 aa
Strand:+
Location:C07: 39105598 : 39106934
Gene CDSs(7): 1-66 | 184-284 | 377-534 | 597-671 | 753-892 | 982-1075 | 1138-1337 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00914SYNTAXIN 190 229 NAIPR006012Syntaxin/epimorphin, conserved site
HMMPfamPF00804Syntaxin 19 120 1.2e-13IPR006011Syntaxin, N-terminal
HMMPfamPF05739SNARE 189 251 3.4e-25IPR000727Target SNARE coiled-coil region
superfamilySSF47661t-snare proteins 20 239 6.1e-38IPR010989t-SNARE
HMMPantherPTHR19957SYNTAXIN 25 214 4.5e-102Not foundNot found
HMMPantherPTHR19957:SF11SYNTAXIN, PLANT 25 214 4.5e-102Not foundNot found
HMMSmartSM00397no description 179 246 1.2e-19IPR000727Target SNARE coiled-coil region
HMMSmartSM00503no description 18 131 3.8e-25IPR006011Syntaxin, N-terminal
Segsegseg 259 277 NANot foundNot found
Segsegseg 186 203 NANot foundNot found
Gene3DG3DSA:1.20.1050.30no description 27 239 1e-35Not foundNot found
ProfileScanPS50192T_SNARE 184 246 17.917IPR000727Target SNARE coiled-coil region
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
O043781e-115SYP23_ARATH Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q2A9761e-138Q2A976_BRAOL Syntaxin, putative OS=Brassica oleracea GN=40.t00043 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G177301e-116K08488STX7syntaxin 7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27013(2 genes,2 taxa):Brassica oleraceaBol037110
ORTHOMCL27013(2 genes,2 taxa):Brassica rapaBra012645
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:38920392..39414838 (-)A.thalianaChr5:18801218..19307895 (+)29
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:38893500..39414838 (+)B.rapaA09:29069214..30023136 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G1773098651039867022Chr4Subgenome_I97
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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