Basic Information
Gene Model:Bol037083
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000026
Sequence:
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Gene Structure
Nucleotide Length:2920 bp
Transcript Length:1560 bp
Protein Length:519 aa
Strand:-
Location:C07: 39316337 : 39319256
Gene CDSs(9): 1-136 | 745-894 | 988-1034 | 1108-1185 | 1272-1736 | 1811-1951 | 2033-2287 | 2538-2642 | 2738-2920 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 290 345 2.8e-30IPR006447Myb-like DNA-binding region, SHAQKYF class
superfamilySSF52172CheY-like 15 136 1.5e-10IPR011006CheY-like
superfamilySSF46689Homeodomain-like 286 349 3.6e-18IPR009057Homeodomain-like
Gene3DG3DSA:3.40.50.2300no description 11 144 7e-06Not foundNot found
Gene3DG3DSA:1.10.10.60no description 286 349 3.6e-21IPR012287Homeodomain-related
ProfileScanPS51294HTH_MYB 287 346 16.406IPR017930Myb-type HTH DNA-binding domain
ProfileScanPS50110RESPONSE_REGULATORY 19 135 12.556IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00249Myb_DNA-binding 292 342 2e-10IPR014778Myb, DNA-binding
Segsegseg 474 486 NANot foundNot found
Segsegseg 275 287 NANot foundNot found
Segsegseg 395 408 NANot foundNot found
Segsegseg 17 29 NANot foundNot found
Segsegseg 232 258 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q6LA430.0APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2
TrEMBL
Best HitE_value Description
A7PCE11e-122A7PCE1_VITVI Chromosome chr2 scaffold_11, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015824001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002554713e-22K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1576(17 genes,6 taxa):Arabidopsis thalianaAT4G18020.1
ORTHOMCL1576(17 genes,6 taxa):Brassica oleraceaBol003963
ORTHOMCL1576(17 genes,6 taxa):Brassica oleraceaBol037083
ORTHOMCL1576(17 genes,6 taxa):Brassica rapaBra012623
ORTHOMCL1576(17 genes,6 taxa):Brassica rapaBra013277
ORTHOMCL1576(17 genes,6 taxa):Brassica rapaBra013278
ORTHOMCL1576(17 genes,6 taxa):Vitis viniferaGSVIVT01013234001
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.1
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.2
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.3
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.4
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.5
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.6
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.7
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0003s08600.1
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0003s08600.2
ORTHOMCL1576(17 genes,6 taxa):Carica papayaevm.TU.supercontig_6.417
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:38920392..39414838 (-)A.thalianaChr5:18801218..19307895 (+)29
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:38893500..39414838 (+)B.rapaA09:29069214..30023136 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G180201000329110007443Chr4Subgenome_I97
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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