Basic Information
Gene Model:Bol037025
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000026
Sequence:
 | 
Gene Structure
Nucleotide Length:1532 bp
Transcript Length:651 bp
Protein Length:216 aa
Strand:-
Location:C07: 40366622 : 40368153
Gene CDSs(5): 1-193 | 738-861 | 961-1081 | 1230-1292 | 1383-1532 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00957Synaptobrevin 122 210 4e-41IPR001388Synaptobrevin
PatternScanPS00417SYNAPTOBREVIN 143 162 NAIPR001388Synaptobrevin
ProfileScanPS50859LONGIN 11 109 20.544IPR010908Longin
ProfileScanPS50892V_SNARE 125 185 19.385IPR001388Synaptobrevin
Segsegseg 188 206 NANot foundNot found
HMMPantherPTHR21136SNARE PROTEINS 11 214 4e-126Not foundNot found
HMMPantherPTHR21136:SF8VAMP-7 11 214 4e-126Not foundNot found
superfamilySSF64356SNARE-like 6 117 2.2e-26IPR011012Longin-like
Gene3DG3DSA:1.20.5.110no description 110 189 1.5e-25Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
P471921e-110VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q2V4361e-108Q2V436_ARATH AT2G33120 protein OS=Arabidopsis thaliana GN=AT2G33120 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G326701e-103K08511ATVAMP72vesicle-associated membrane protein 72
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G331201404346914045543Chr2Subgenome_II59
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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