Basic Information
Gene Model:Bol036923
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:1612 bp
Transcript Length:1461 bp
Protein Length:486 aa
Strand:+
Location:C05: 27302378 : 27303989
Gene CDSs(3): 1-1068 | 1137-1401 | 1485-1612 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 123 473 4.4e-133IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 123 473 4.4e-133Not foundNot found
HMMSmartSM00332no description 134 471 2.7e-56IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 267 430 2.3e-31IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 214 230 NANot foundNot found
Segsegseg 332 345 NANot foundNot found
Segsegseg 117 128 NANot foundNot found
superfamilySSF81606Protein serine/threo 123 478 1.9e-52IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 159 477 1.1e-49IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LUS80.0P2C40_ARATH Probable protein phosphatase 2C 40 OS=Arabidopsis thaliana GN=At3g16560 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7NW441e-171A7NW44_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019775001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
spu:5840182e-22K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6189(10 genes,8 taxa):Arabidopsis thalianaAT3G16560.1
ORTHOMCL6189(10 genes,8 taxa):Brassica oleraceaBol036923
ORTHOMCL6189(10 genes,8 taxa):Brassica rapaBra022166
ORTHOMCL6189(10 genes,8 taxa):Vitis viniferaGSVIVT01017754001
ORTHOMCL6189(10 genes,8 taxa):Oryza sativaOs04t0403701-01
ORTHOMCL6189(10 genes,8 taxa):Populus trichocarpaPOPTR_0003s15790.1
ORTHOMCL6189(10 genes,8 taxa):Populus trichocarpaPOPTR_0010s02560.1
ORTHOMCL6189(10 genes,8 taxa):Populus trichocarpaPOPTR_0026s00200.1
ORTHOMCL6189(10 genes,8 taxa):Sorghum bicolorSb06g015150.1
ORTHOMCL6189(10 genes,8 taxa):Carica papayaevm.TU.supercontig_16.169
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26556328..28445586 (-)A.thalianaChr3:4961806..5894446 (+)139
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26541780..27385560 (+)B.rapaA05:4405357..4782135 (-)43
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1656056355965638482Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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