Basic Information
Gene Model:Bol036910
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:807 bp
Transcript Length:807 bp
Protein Length:268 aa
Strand:-
Location:C05: 27137078 : 27137884
Gene CDSs(1): 1-807 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 78 94 NANot foundNot found
Segsegseg 34 72 NANot foundNot found
ProfileScanPS50089ZF_RING_2 115 157 12.548IPR001841Zinc finger, RING-type
HMMPfamPF00097zf-C3HC4 115 156 6.8e-11IPR018957Zinc finger, C3HC4 RING-type
HMMPantherPTHR14155RING FINGER PROTEIN 89 156 4.5e-21Not foundNot found
HMMPantherPTHR14155:SF2RING FINGER PROTEIN 89 156 4.5e-21Not foundNot found
superfamilySSF57850RING/U-box 108 162 1.9e-16Not foundNot found
Gene3DG3DSA:3.30.40.10no description 108 162 1.2e-14Not foundNot found
HMMSmartSM00184no description 115 156 1e-06IPR001841Zinc finger, RING-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q8L9T56e-99ATL3F_ARATH RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2
TrEMBL
Best HitE_value Description
Q4FE427e-98Q4FE42_ARATH At3g16720 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
xtr:4484024e-09K11982RNF115_126E3 ubiquitin-protein ligase RNF115/126
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26996(2 genes,2 taxa):Brassica oleraceaBol036910
ORTHOMCL26996(2 genes,2 taxa):Brassica rapaBra022174
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26556328..28445586 (-)A.thalianaChr3:4961806..5894446 (+)139
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26541780..27385560 (+)B.rapaA05:4405357..4782135 (-)43
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1672056927385694127Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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