Basic Information
Gene Model:Bol036899
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:3387 bp
Transcript Length:2043 bp
Protein Length:680 aa
Strand:-
Location:C05: 27002243 : 27005629
Gene CDSs(6): 1-72 | 396-1535 | 1904-1980 | 2069-2488 | 2572-2724 | 3207-3387 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00249Myb_DNA-binding 230 280 1.4e-12IPR014778Myb, DNA-binding
HMMPfamPF00072Response_reg 37 148 8.6e-25IPR001789Signal transduction response regulator, receiver region
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 228 283 2.9e-30IPR006447Myb-like DNA-binding region, SHAQKYF class
superfamilySSF52172CheY-like 32 168 2.9e-36IPR011006CheY-like
superfamilySSF46689Homeodomain-like 224 287 2.5e-20IPR009057Homeodomain-like
Segsegseg 525 538 NANot foundNot found
Segsegseg 571 592 NANot foundNot found
Segsegseg 620 626 NANot foundNot found
Segsegseg 194 222 NANot foundNot found
Segsegseg 326 342 NANot foundNot found
Segsegseg 5 24 NANot foundNot found
HMMPIRPIRSF036392Response regulator, 4 677 1.2e-262IPR017053Response regulator, plant B-type
Gene3DG3DSA:1.10.10.60no description 224 287 1.9e-23IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 32 187 5.8e-30Not foundNot found
HMMPantherPTHR23283:SF21TWO-COMPONENT SYSTEM 36 155 1.7e-17Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 36 155 1.7e-17Not foundNot found
PatternScanPS00217SUGAR_TRANSPORT_2 390 415 NAIPR005829Sugar transporter, conserved site
HMMSmartSM00448no description 35 147 7.4e-31IPR001789Signal transduction response regulator, receiver region
ProfileScanPS51294HTH_MYB 225 284 11.540IPR017930Myb-type HTH DNA-binding domain
ProfileScanPS50110RESPONSE_REGULATORY 36 151 31.592IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0005215 Molecular Function transporter activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0045449 Biological Process regulation of transcription
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q940D00.0ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q67YH90.0Q67YH9_ARATH Putative ARR1 protein OS=Arabidopsis thaliana GN=At3g16857 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G168570.0K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3097(13 genes,6 taxa):Arabidopsis thalianaAT3G16857.2
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol020274
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol022968
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol036899
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol037208
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra001643
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra012743
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra022183
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra033527
ORTHOMCL3097(13 genes,6 taxa):Vitis viniferaGSVIVT01035051001
ORTHOMCL3097(13 genes,6 taxa):Populus trichocarpaPOPTR_0008s22990.1
ORTHOMCL3097(13 genes,6 taxa):Populus trichocarpaPOPTR_0010s00320.1
ORTHOMCL3097(13 genes,6 taxa):Carica papayaevm.TU.supercontig_9.100
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26556328..28445586 (-)A.thalianaChr3:4961806..5894446 (+)139
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26541780..27385560 (+)B.rapaA05:4405357..4782135 (-)43
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1685757559245759443Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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